Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03016 and SMc03017 are separated by 8 nucleotides SMc03017 and SMc03018 overlap by 4 nucleotides SMc03018 and SMc03019 are separated by 211 nucleotides
SMc03016: SMc03016 - transcriptional regulator, at 714,838 to 715,578
SMc03016
SMc03017: SMc03017 - hypothetical protein, at 715,587 to 716,033
SMc03017
SMc03018: SMc03018 - flagellar biosynthesis protein FlhB, at 716,030 to 717,112
SMc03018
SMc03019: SMc03019 - flagellar motor switch protein G, at 717,324 to 718,361
SMc03019
Position (kb) 716
717
718 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 715.261 kb on + strand, within SMc03016 at 715.262 kb on - strand, within SMc03016 at 715.262 kb on - strand, within SMc03016 at 715.283 kb on - strand, within SMc03016 at 715.437 kb on + strand, within SMc03016 at 715.437 kb on + strand, within SMc03016 at 715.492 kb on + strand, within SMc03016 at 715.492 kb on + strand, within SMc03016 at 715.493 kb on - strand, within SMc03016 at 715.493 kb on - strand, within SMc03016 at 715.493 kb on - strand, within SMc03016 at 715.567 kb on + strand at 715.568 kb on - strand at 715.569 kb on + strand at 715.570 kb on - strand at 715.570 kb on - strand at 715.570 kb on - strand at 715.659 kb on - strand, within SMc03017 at 715.722 kb on - strand, within SMc03017 at 715.817 kb on + strand, within SMc03017 at 715.818 kb on - strand at 715.819 kb on + strand, within SMc03017 at 715.820 kb on - strand, within SMc03017 at 715.820 kb on - strand, within SMc03017 at 715.861 kb on + strand, within SMc03017 at 715.861 kb on + strand, within SMc03017 at 715.861 kb on + strand, within SMc03017 at 715.862 kb on - strand, within SMc03017 at 715.903 kb on + strand, within SMc03017 at 715.958 kb on - strand, within SMc03017 at 715.990 kb on - strand at 715.990 kb on - strand at 716.065 kb on - strand at 716.233 kb on + strand, within SMc03018 at 716.234 kb on - strand, within SMc03018 at 716.271 kb on + strand, within SMc03018 at 716.272 kb on - strand, within SMc03018 at 716.272 kb on - strand, within SMc03018 at 716.282 kb on + strand, within SMc03018 at 716.290 kb on - strand, within SMc03018 at 716.457 kb on + strand, within SMc03018 at 716.458 kb on - strand, within SMc03018 at 716.604 kb on + strand, within SMc03018 at 716.649 kb on - strand, within SMc03018 at 716.694 kb on + strand, within SMc03018 at 716.695 kb on - strand, within SMc03018 at 716.695 kb on - strand, within SMc03018 at 716.887 kb on + strand, within SMc03018 at 717.085 kb on + strand at 717.303 kb on + strand at 717.303 kb on + strand at 717.304 kb on - strand at 717.305 kb on + strand at 717.306 kb on - strand at 717.624 kb on + strand, within SMc03019 at 717.625 kb on - strand, within SMc03019 at 717.625 kb on - strand, within SMc03019 at 717.625 kb on - strand, within SMc03019 at 717.925 kb on + strand, within SMc03019 at 717.926 kb on - strand, within SMc03019
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 715,261 + SMc03016 0.57 -1.4 715,262 - SMc03016 0.57 +1.1 715,262 - SMc03016 0.57 -0.4 715,283 - SMc03016 0.60 +0.6 715,437 + SMc03016 0.81 +0.4 715,437 + SMc03016 0.81 +0.3 715,492 + SMc03016 0.88 -0.7 715,492 + SMc03016 0.88 +0.3 715,493 - SMc03016 0.88 +0.7 715,493 - SMc03016 0.88 +0.3 715,493 - SMc03016 0.88 +1.5 715,567 + +0.2 715,568 - +0.1 715,569 + -0.0 715,570 - +0.1 715,570 - +0.5 715,570 - +0.4 715,659 - SMc03017 0.16 -0.1 715,722 - SMc03017 0.30 -0.3 715,817 + SMc03017 0.51 +0.0 715,818 - +3.1 715,819 + SMc03017 0.52 -0.4 715,820 - SMc03017 0.52 -0.4 715,820 - SMc03017 0.52 -0.9 715,861 + SMc03017 0.61 -0.5 715,861 + SMc03017 0.61 -0.2 715,861 + SMc03017 0.61 -2.4 715,862 - SMc03017 0.62 -0.7 715,903 + SMc03017 0.71 -0.9 715,958 - SMc03017 0.83 -1.1 715,990 - +0.5 715,990 - -0.6 716,065 - -0.1 716,233 + SMc03018 0.19 -0.1 716,234 - SMc03018 0.19 +1.1 716,271 + SMc03018 0.22 -0.3 716,272 - SMc03018 0.22 +0.3 716,272 - SMc03018 0.22 -1.2 716,282 + SMc03018 0.23 -0.7 716,290 - SMc03018 0.24 -0.1 716,457 + SMc03018 0.39 -0.2 716,458 - SMc03018 0.40 +0.9 716,604 + SMc03018 0.53 -0.2 716,649 - SMc03018 0.57 -0.0 716,694 + SMc03018 0.61 +0.3 716,695 - SMc03018 0.61 -0.4 716,695 - SMc03018 0.61 +1.0 716,887 + SMc03018 0.79 -0.5 717,085 + -0.0 717,303 + -0.3 717,303 + +0.4 717,304 - +0.7 717,305 + -0.3 717,306 - -0.0 717,624 + SMc03019 0.29 +0.1 717,625 - SMc03019 0.29 +1.6 717,625 - SMc03019 0.29 -0.5 717,625 - SMc03019 0.29 +0.3 717,925 + SMc03019 0.58 -0.1 717,926 - SMc03019 0.58 +1.1
Or see this region's nucleotide sequence