Strain Fitness in Sinorhizobium meliloti 1021 around SMc02981

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02979 and SMc02980 are separated by 78 nucleotidesSMc02980 and SMc02981 are separated by 277 nucleotidesSMc02981 and SMc02982 are separated by 97 nucleotidesSMc02982 and SMc02983 are separated by 85 nucleotides SMc02979: SMc02979 - hypothetical protein, at 3,100,711 to 3,101,700 SMc02979 SMc02980: SMc02980 - hypothetical protein, at 3,101,779 to 3,102,225 SMc02980 SMc02981: SMc02981 - amino acid efflux transmembrane protein, at 3,102,503 to 3,103,138 SMc02981 SMc02982: SMc02982 - hypothetical protein, at 3,103,236 to 3,103,826 SMc02982 SMc02983: SMc02983 - ornithine, DAP, or arginine decarboxylase, at 3,103,912 to 3,105,051 SMc02983 Position (kb) 3102 3103 3104Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3101.534 kb on - strand, within SMc02979at 3102.092 kb on + strand, within SMc02980at 3102.211 kb on + strandat 3102.211 kb on + strandat 3102.241 kb on + strandat 3102.443 kb on + strandat 3102.443 kb on + strandat 3102.443 kb on + strandat 3102.444 kb on - strandat 3102.444 kb on - strandat 3102.444 kb on - strandat 3102.490 kb on + strandat 3102.643 kb on - strand, within SMc02981at 3102.756 kb on - strand, within SMc02981at 3102.890 kb on + strand, within SMc02981at 3102.891 kb on - strand, within SMc02981at 3102.953 kb on + strand, within SMc02981at 3102.953 kb on + strand, within SMc02981at 3103.411 kb on + strand, within SMc02982at 3103.412 kb on - strand, within SMc02982at 3103.412 kb on - strand, within SMc02982at 3103.415 kb on - strand, within SMc02982at 3103.499 kb on + strand, within SMc02982at 3103.499 kb on + strand, within SMc02982at 3103.922 kb on + strandat 3103.922 kb on + strandat 3103.923 kb on - strandat 3103.931 kb on - strandat 3104.036 kb on + strand, within SMc02983at 3104.037 kb on - strand, within SMc02983at 3104.037 kb on - strand, within SMc02983at 3104.051 kb on + strand, within SMc02983at 3104.052 kb on - strand, within SMc02983

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
3,101,534 - SMc02979 0.83 -2.5
3,102,092 + SMc02980 0.70 +0.3
3,102,211 + -0.5
3,102,211 + +0.6
3,102,241 + -0.3
3,102,443 + +0.1
3,102,443 + -1.2
3,102,443 + -0.4
3,102,444 - +0.1
3,102,444 - +1.5
3,102,444 - -0.5
3,102,490 + -0.4
3,102,643 - SMc02981 0.22 -0.1
3,102,756 - SMc02981 0.40 +0.1
3,102,890 + SMc02981 0.61 +0.1
3,102,891 - SMc02981 0.61 +0.4
3,102,953 + SMc02981 0.71 +0.7
3,102,953 + SMc02981 0.71 +5.0
3,103,411 + SMc02982 0.30 -0.1
3,103,412 - SMc02982 0.30 +1.4
3,103,412 - SMc02982 0.30 -0.8
3,103,415 - SMc02982 0.30 -1.0
3,103,499 + SMc02982 0.45 -0.9
3,103,499 + SMc02982 0.45 -0.6
3,103,922 + +0.5
3,103,922 + +1.4
3,103,923 - +0.4
3,103,931 - +0.6
3,104,036 + SMc02983 0.11 -0.4
3,104,037 - SMc02983 0.11 +0.9
3,104,037 - SMc02983 0.11 +0.1
3,104,051 + SMc02983 0.12 +1.2
3,104,052 - SMc02983 0.12 +0.4

Or see this region's nucleotide sequence