Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02979 and SMc02980 are separated by 78 nucleotides SMc02980 and SMc02981 are separated by 277 nucleotides SMc02981 and SMc02982 are separated by 97 nucleotides SMc02982 and SMc02983 are separated by 85 nucleotides
SMc02979: SMc02979 - hypothetical protein, at 3,100,711 to 3,101,700
SMc02979
SMc02980: SMc02980 - hypothetical protein, at 3,101,779 to 3,102,225
SMc02980
SMc02981: SMc02981 - amino acid efflux transmembrane protein, at 3,102,503 to 3,103,138
SMc02981
SMc02982: SMc02982 - hypothetical protein, at 3,103,236 to 3,103,826
SMc02982
SMc02983: SMc02983 - ornithine, DAP, or arginine decarboxylase, at 3,103,912 to 3,105,051
SMc02983
Position (kb)
3102
3103
3104 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3101.534 kb on - strand, within SMc02979 at 3102.092 kb on + strand, within SMc02980 at 3102.211 kb on + strand at 3102.211 kb on + strand at 3102.241 kb on + strand at 3102.443 kb on + strand at 3102.443 kb on + strand at 3102.443 kb on + strand at 3102.444 kb on - strand at 3102.444 kb on - strand at 3102.444 kb on - strand at 3102.490 kb on + strand at 3102.643 kb on - strand, within SMc02981 at 3102.756 kb on - strand, within SMc02981 at 3102.890 kb on + strand, within SMc02981 at 3102.891 kb on - strand, within SMc02981 at 3102.953 kb on + strand, within SMc02981 at 3102.953 kb on + strand, within SMc02981 at 3103.411 kb on + strand, within SMc02982 at 3103.412 kb on - strand, within SMc02982 at 3103.412 kb on - strand, within SMc02982 at 3103.415 kb on - strand, within SMc02982 at 3103.499 kb on + strand, within SMc02982 at 3103.499 kb on + strand, within SMc02982 at 3103.922 kb on + strand at 3103.922 kb on + strand at 3103.923 kb on - strand at 3103.931 kb on - strand at 3104.036 kb on + strand, within SMc02983 at 3104.037 kb on - strand, within SMc02983 at 3104.037 kb on - strand, within SMc02983 at 3104.051 kb on + strand, within SMc02983 at 3104.052 kb on - strand, within SMc02983
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,101,534 - SMc02979 0.83 -2.5 3,102,092 + SMc02980 0.70 +0.3 3,102,211 + -0.5 3,102,211 + +0.6 3,102,241 + -0.3 3,102,443 + +0.1 3,102,443 + -1.2 3,102,443 + -0.4 3,102,444 - +0.1 3,102,444 - +1.5 3,102,444 - -0.5 3,102,490 + -0.4 3,102,643 - SMc02981 0.22 -0.1 3,102,756 - SMc02981 0.40 +0.1 3,102,890 + SMc02981 0.61 +0.1 3,102,891 - SMc02981 0.61 +0.4 3,102,953 + SMc02981 0.71 +0.7 3,102,953 + SMc02981 0.71 +5.0 3,103,411 + SMc02982 0.30 -0.1 3,103,412 - SMc02982 0.30 +1.4 3,103,412 - SMc02982 0.30 -0.8 3,103,415 - SMc02982 0.30 -1.0 3,103,499 + SMc02982 0.45 -0.9 3,103,499 + SMc02982 0.45 -0.6 3,103,922 + +0.5 3,103,922 + +1.4 3,103,923 - +0.4 3,103,931 - +0.6 3,104,036 + SMc02983 0.11 -0.4 3,104,037 - SMc02983 0.11 +0.9 3,104,037 - SMc02983 0.11 +0.1 3,104,051 + SMc02983 0.12 +1.2 3,104,052 - SMc02983 0.12 +0.4
Or see this region's nucleotide sequence