Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02903 and SMc02904 are separated by 2 nucleotides SMc02904 and SMc02905 overlap by 20 nucleotides SMc02905 and SMc02906 are separated by 108 nucleotides SMc02906 and SMc02907 are separated by 75 nucleotides
SMc02903: SMc02903 - hypothetical protein, at 258,435 to 259,415
SMc02903
SMc02904: SMc02904 - hypothetical protein, at 259,418 to 260,143
SMc02904
SMc02905: SMc02905 - DNA polymerase III subunits gamma and tau, at 260,124 to 262,004
SMc02905
SMc02906: SMc02906 - hypothetical protein, at 262,113 to 262,436
SMc02906
SMc02907: SMc02907 - amino acid efflux transmembrane protein, at 262,512 to 263,123
SMc02907
Position (kb) 260
261
262
263 Strain fitness (log2 ratio) -2
-1
0
1
2 at 259.453 kb on + strand at 259.453 kb on + strand at 259.453 kb on + strand at 259.453 kb on + strand at 259.454 kb on - strand at 259.454 kb on - strand at 259.454 kb on - strand at 259.688 kb on + strand, within SMc02904 at 259.688 kb on + strand, within SMc02904 at 259.689 kb on - strand, within SMc02904 at 259.866 kb on + strand, within SMc02904 at 262.014 kb on - strand at 262.053 kb on + strand at 262.078 kb on + strand at 262.338 kb on - strand, within SMc02906 at 262.477 kb on + strand at 262.478 kb on - strand at 262.478 kb on - strand at 262.478 kb on - strand at 262.667 kb on - strand, within SMc02907 at 262.755 kb on + strand, within SMc02907 at 262.756 kb on - strand, within SMc02907 at 262.865 kb on + strand, within SMc02907 at 262.896 kb on + strand, within SMc02907 at 262.896 kb on + strand, within SMc02907 at 262.896 kb on + strand, within SMc02907 at 262.897 kb on - strand, within SMc02907
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 259,453 + +0.1 259,453 + +1.1 259,453 + +0.2 259,453 + +0.3 259,454 - -0.1 259,454 - +1.7 259,454 - -0.2 259,688 + SMc02904 0.37 +0.3 259,688 + SMc02904 0.37 +0.6 259,689 - SMc02904 0.37 +2.3 259,866 + SMc02904 0.62 +0.9 262,014 - +0.8 262,053 + +0.4 262,078 + +0.3 262,338 - SMc02906 0.69 -0.4 262,477 + +1.5 262,478 - -0.6 262,478 - +0.3 262,478 - +0.3 262,667 - SMc02907 0.25 +0.0 262,755 + SMc02907 0.40 -2.0 262,756 - SMc02907 0.40 -0.7 262,865 + SMc02907 0.58 +2.3 262,896 + SMc02907 0.63 -0.1 262,896 + SMc02907 0.63 +0.0 262,896 + SMc02907 0.63 +0.2 262,897 - SMc02907 0.63 -0.8
Or see this region's nucleotide sequence