Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02865 and SMc02866 overlap by 8 nucleotides SMc02866 and SMc02867 are separated by 61 nucleotides SMc02867 and SMc02868 are separated by 10 nucleotides
SMc02865: SMc02865 - acetyltransferase, at 218,732 to 219,202
SMc02865
SMc02866: SMc02866 - transcriptional regulator, at 219,195 to 219,845
SMc02866
SMc02867: SMc02867 - multidrug-efflux system transmembrane protein, at 219,907 to 223,053
SMc02867
SMc02868: SMc02868 - multidrug efflux system protein, at 223,064 to 224,287
SMc02868
Position (kb) 219
220
221
222
223
224 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 218.960 kb on + strand, within SMc02865 at 218.961 kb on - strand, within SMc02865 at 218.961 kb on - strand, within SMc02865 at 219.007 kb on - strand, within SMc02865 at 219.497 kb on - strand, within SMc02866 at 219.703 kb on + strand, within SMc02866 at 219.815 kb on + strand at 219.816 kb on - strand at 219.816 kb on - strand at 219.848 kb on - strand at 219.884 kb on - strand at 219.909 kb on - strand at 220.292 kb on + strand, within SMc02867 at 220.613 kb on + strand, within SMc02867 at 221.423 kb on + strand, within SMc02867 at 221.423 kb on + strand, within SMc02867 at 221.424 kb on - strand, within SMc02867 at 221.477 kb on + strand, within SMc02867 at 221.654 kb on + strand, within SMc02867 at 222.230 kb on + strand, within SMc02867 at 222.230 kb on + strand, within SMc02867 at 222.231 kb on - strand, within SMc02867 at 222.231 kb on - strand, within SMc02867 at 222.231 kb on - strand, within SMc02867 at 222.881 kb on + strand at 222.881 kb on + strand at 222.882 kb on - strand at 222.882 kb on - strand at 222.882 kb on - strand at 222.916 kb on - strand at 223.056 kb on + strand at 223.057 kb on - strand at 223.309 kb on - strand, within SMc02868 at 223.309 kb on - strand, within SMc02868 at 223.309 kb on - strand, within SMc02868 at 223.404 kb on + strand, within SMc02868 at 223.405 kb on - strand, within SMc02868 at 223.641 kb on + strand, within SMc02868 at 223.641 kb on + strand, within SMc02868 at 223.642 kb on - strand, within SMc02868 at 223.759 kb on + strand, within SMc02868 at 223.760 kb on - strand, within SMc02868 at 223.761 kb on + strand, within SMc02868 at 223.852 kb on - strand, within SMc02868
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 218,960 + SMc02865 0.48 +0.2 218,961 - SMc02865 0.49 +0.5 218,961 - SMc02865 0.49 +1.0 219,007 - SMc02865 0.58 -0.6 219,497 - SMc02866 0.46 -1.0 219,703 + SMc02866 0.78 -0.6 219,815 + -0.7 219,816 - -1.2 219,816 - -1.3 219,848 - -0.1 219,884 - -0.9 219,909 - -3.0 220,292 + SMc02867 0.12 -1.4 220,613 + SMc02867 0.22 -0.4 221,423 + SMc02867 0.48 -0.3 221,423 + SMc02867 0.48 -0.9 221,424 - SMc02867 0.48 -1.5 221,477 + SMc02867 0.50 -2.8 221,654 + SMc02867 0.56 -1.7 222,230 + SMc02867 0.74 -2.2 222,230 + SMc02867 0.74 -1.0 222,231 - SMc02867 0.74 -1.8 222,231 - SMc02867 0.74 -2.8 222,231 - SMc02867 0.74 -1.6 222,881 + -1.4 222,881 + -2.8 222,882 - +0.1 222,882 - -1.0 222,882 - -2.1 222,916 - -0.5 223,056 + -0.7 223,057 - -0.0 223,309 - SMc02868 0.20 -0.9 223,309 - SMc02868 0.20 -1.1 223,309 - SMc02868 0.20 +0.4 223,404 + SMc02868 0.28 +0.5 223,405 - SMc02868 0.28 -2.1 223,641 + SMc02868 0.47 -1.1 223,641 + SMc02868 0.47 -0.4 223,642 - SMc02868 0.47 -1.2 223,759 + SMc02868 0.57 +0.2 223,760 - SMc02868 0.57 -0.7 223,761 + SMc02868 0.57 -0.0 223,852 - SMc02868 0.64 -0.5
Or see this region's nucleotide sequence