Strain Fitness in Sinorhizobium meliloti 1021 around SMc02858

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02857 and SMc02858 are separated by 274 nucleotidesSMc02858 and SMc02859 are separated by 172 nucleotides SMc02857: SMc02857 - molecular chaperone DnaK, at 209,764 to 211,689 SMc02857 SMc02858: SMc02858 - chaperone protein DnaJ, at 211,964 to 213,103 SMc02858 SMc02859: SMc02859 - hypothetical protein, at 213,276 to 214,160 SMc02859 Position (kb) 211 212 213 214Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 211.561 kb on + strandat 211.561 kb on + strandat 211.562 kb on - strandat 211.878 kb on + strandat 211.895 kb on + strandat 211.944 kb on - strandat 212.771 kb on + strand, within SMc02858at 213.470 kb on - strand, within SMc02859at 213.470 kb on - strand, within SMc02859at 213.633 kb on + strand, within SMc02859at 213.805 kb on + strand, within SMc02859at 213.971 kb on + strand, within SMc02859at 214.066 kb on + strand, within SMc02859

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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211,561 + +2.8
211,561 + +3.9
211,562 - +3.8
211,878 + +0.1
211,895 + -0.3
211,944 - -0.9
212,771 + SMc02858 0.71 -2.9
213,470 - SMc02859 0.22 -0.8
213,470 - SMc02859 0.22 -1.0
213,633 + SMc02859 0.40 -0.4
213,805 + SMc02859 0.60 -0.0
213,971 + SMc02859 0.79 +0.3
214,066 + SMc02859 0.89 -1.1

Or see this region's nucleotide sequence