Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02825 and SMc02826 are separated by 87 nucleotides SMc02826 and SMc02827 are separated by 8 nucleotides SMc02827 and SMc02828 are separated by 236 nucleotides
SMc02825: SMc02825 - aminopeptidase, at 172,213 to 173,604
SMc02825
SMc02826: SMc02826 - transcriptional regulator, at 173,692 to 174,036
SMc02826
SMc02827: SMc02827 - hypothetical protein, at 174,045 to 174,899
SMc02827
SMc02828: SMc02828 - hydroxyacid dehydrogenase, at 175,136 to 176,095
SMc02828
Position (kb) 174
175 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 173.107 kb on + strand, within SMc02825 at 173.107 kb on + strand, within SMc02825 at 173.188 kb on + strand, within SMc02825 at 173.363 kb on - strand, within SMc02825 at 173.363 kb on - strand, within SMc02825 at 173.576 kb on - strand at 173.607 kb on - strand at 173.607 kb on - strand at 173.607 kb on - strand at 173.689 kb on - strand at 173.707 kb on - strand at 173.707 kb on - strand at 173.805 kb on - strand, within SMc02826 at 173.812 kb on + strand, within SMc02826 at 173.960 kb on + strand, within SMc02826 at 173.961 kb on - strand, within SMc02826 at 173.986 kb on + strand, within SMc02826 at 174.041 kb on - strand at 174.041 kb on - strand at 174.041 kb on - strand at 174.294 kb on + strand at 174.303 kb on + strand, within SMc02827 at 174.304 kb on - strand, within SMc02827 at 174.550 kb on - strand, within SMc02827 at 174.835 kb on + strand at 174.835 kb on + strand at 174.867 kb on + strand at 174.867 kb on + strand at 174.867 kb on + strand at 175.033 kb on + strand at 175.033 kb on + strand at 175.034 kb on - strand at 175.161 kb on - strand at 175.161 kb on - strand at 175.161 kb on - strand at 175.161 kb on - strand at 175.264 kb on - strand, within SMc02828 at 175.264 kb on - strand, within SMc02828 at 175.264 kb on - strand, within SMc02828 at 175.264 kb on - strand, within SMc02828 at 175.472 kb on - strand, within SMc02828 at 175.628 kb on - strand, within SMc02828
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 173,107 + SMc02825 0.64 -0.3 173,107 + SMc02825 0.64 -0.2 173,188 + SMc02825 0.70 -0.2 173,363 - SMc02825 0.83 -1.4 173,363 - SMc02825 0.83 -0.2 173,576 - +0.1 173,607 - -0.5 173,607 - -0.8 173,607 - +0.2 173,689 - +0.7 173,707 - +0.6 173,707 - +1.2 173,805 - SMc02826 0.33 +1.0 173,812 + SMc02826 0.35 -0.7 173,960 + SMc02826 0.78 +0.5 173,961 - SMc02826 0.78 -0.1 173,986 + SMc02826 0.85 +1.0 174,041 - -2.9 174,041 - -0.1 174,041 - -1.0 174,294 + +0.7 174,303 + SMc02827 0.30 -1.8 174,304 - SMc02827 0.30 -1.8 174,550 - SMc02827 0.59 -0.9 174,835 + -2.2 174,835 + -0.0 174,867 + +0.4 174,867 + -0.5 174,867 + +1.3 175,033 + -1.1 175,033 + -0.3 175,034 - -1.2 175,161 - +0.3 175,161 - -0.1 175,161 - +0.1 175,161 - +0.1 175,264 - SMc02828 0.13 +0.0 175,264 - SMc02828 0.13 -0.3 175,264 - SMc02828 0.13 -0.2 175,264 - SMc02828 0.13 -0.2 175,472 - SMc02828 0.35 -0.7 175,628 - SMc02828 0.51 +1.9
Or see this region's nucleotide sequence