Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02789 and SMc02788 are separated by 105 nucleotides SMc02788 and SMc02787 are separated by 167 nucleotides SMc02787 and SMc02786 are separated by 134 nucleotides SMc02786 and SMc02785 are separated by 17 nucleotides
SMc02789: SMc02789 - DNA polymerase III subunit epsilon, at 3,574 to 4,302
SMc02789
SMc02788: SMc02788 - preprotein translocase subunit SecB, at 4,408 to 4,914
SMc02788
SMc02787: SMc02787 - hypothetical protein, at 5,082 to 5,657
SMc02787
SMc02786: SMc02786 - translocase transmembrane protein, at 5,792 to 6,493
SMc02786
SMc02785: SMc02785 - lytic murein transglycosylase A protein, at 6,511 to 7,629
SMc02785
Position (kb) 5
6 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4.300 kb on + strand at 4.300 kb on + strand at 4.300 kb on + strand at 4.307 kb on - strand at 4.351 kb on - strand at 4.959 kb on - strand at 4.972 kb on - strand at 4.972 kb on - strand at 4.972 kb on - strand at 5.035 kb on + strand at 5.036 kb on - strand at 5.036 kb on - strand at 5.038 kb on + strand at 5.038 kb on + strand at 5.039 kb on - strand at 5.039 kb on - strand at 5.039 kb on - strand at 5.040 kb on + strand at 5.281 kb on + strand, within SMc02787 at 5.281 kb on + strand, within SMc02787 at 5.281 kb on + strand, within SMc02787 at 5.282 kb on - strand, within SMc02787 at 5.282 kb on - strand, within SMc02787 at 5.734 kb on + strand at 5.734 kb on + strand at 5.748 kb on - strand at 5.748 kb on - strand at 5.748 kb on - strand at 5.749 kb on + strand at 5.750 kb on - strand at 5.750 kb on - strand at 5.759 kb on + strand at 5.759 kb on + strand at 5.760 kb on - strand at 5.771 kb on + strand at 5.868 kb on + strand, within SMc02786 at 5.869 kb on - strand, within SMc02786 at 5.869 kb on - strand, within SMc02786 at 5.869 kb on - strand, within SMc02786 at 5.909 kb on + strand, within SMc02786 at 5.910 kb on - strand, within SMc02786 at 5.910 kb on - strand, within SMc02786 at 6.125 kb on + strand, within SMc02786 at 6.197 kb on + strand, within SMc02786 at 6.198 kb on - strand, within SMc02786 at 6.198 kb on - strand, within SMc02786 at 6.198 kb on - strand, within SMc02786 at 6.198 kb on - strand, within SMc02786 at 6.346 kb on + strand, within SMc02786 at 6.359 kb on + strand, within SMc02786 at 6.631 kb on + strand, within SMc02785 at 6.632 kb on - strand, within SMc02785
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,300 + -1.9 4,300 + -0.1 4,300 + -0.2 4,307 - +0.5 4,351 - -0.3 4,959 - +0.1 4,972 - -0.6 4,972 - -1.7 4,972 - -0.1 5,035 + -0.1 5,036 - +0.7 5,036 - +2.9 5,038 + +0.3 5,038 + +0.1 5,039 - -0.0 5,039 - -0.7 5,039 - +0.2 5,040 + +0.7 5,281 + SMc02787 0.35 -0.6 5,281 + SMc02787 0.35 -0.3 5,281 + SMc02787 0.35 -0.7 5,282 - SMc02787 0.35 +0.3 5,282 - SMc02787 0.35 -1.4 5,734 + -0.9 5,734 + -0.2 5,748 - +0.5 5,748 - -0.3 5,748 - +0.7 5,749 + +0.6 5,750 - +0.7 5,750 - +0.8 5,759 + +3.9 5,759 + -0.2 5,760 - -0.0 5,771 + +0.3 5,868 + SMc02786 0.11 +0.1 5,869 - SMc02786 0.11 +1.2 5,869 - SMc02786 0.11 +0.7 5,869 - SMc02786 0.11 -0.3 5,909 + SMc02786 0.17 +0.0 5,910 - SMc02786 0.17 +0.8 5,910 - SMc02786 0.17 +0.5 6,125 + SMc02786 0.47 -0.6 6,197 + SMc02786 0.58 +0.0 6,198 - SMc02786 0.58 +0.1 6,198 - SMc02786 0.58 -0.4 6,198 - SMc02786 0.58 +0.6 6,198 - SMc02786 0.58 +0.6 6,346 + SMc02786 0.79 -0.3 6,359 + SMc02786 0.81 +0.0 6,631 + SMc02785 0.11 -0.7 6,632 - SMc02785 0.11 -0.9
Or see this region's nucleotide sequence