Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02659 and SMc02658 are separated by 49 nucleotides SMc02658 and SMc02657 overlap by 4 nucleotides SMc02657 and SMc02656 are separated by 131 nucleotides SMc02656 and SMc02655 are separated by 221 nucleotides
SMc02659: SMc02659 - GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein, at 1,164,419 to 1,166,644
SMc02659
SMc02658: SMc02658 - hypothetical protein, at 1,166,694 to 1,166,927
SMc02658
SMc02657: SMc02657 - hypothetical protein, at 1,166,924 to 1,167,208
SMc02657
SMc02656: SMc02656 - hypothetical protein, at 1,167,340 to 1,167,492
SMc02656
SMc02655: SMc02655 - hypothetical protein, at 1,167,714 to 1,168,358
SMc02655
Position (kb)
1166
1167
1168 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7 at 1166.312 kb on + strand, within SMc02659 at 1166.312 kb on + strand, within SMc02659 at 1166.494 kb on + strand at 1166.616 kb on + strand at 1166.616 kb on + strand at 1166.616 kb on + strand at 1166.617 kb on - strand at 1166.680 kb on + strand at 1166.681 kb on - strand at 1166.681 kb on - strand at 1166.709 kb on - strand at 1166.759 kb on + strand, within SMc02658 at 1166.900 kb on + strand, within SMc02658 at 1167.050 kb on + strand, within SMc02657 at 1167.050 kb on + strand, within SMc02657 at 1167.051 kb on - strand, within SMc02657 at 1167.302 kb on + strand at 1167.302 kb on + strand at 1167.302 kb on + strand at 1167.303 kb on - strand at 1167.409 kb on + strand, within SMc02656 at 1167.445 kb on + strand, within SMc02656 at 1167.445 kb on + strand, within SMc02656 at 1167.446 kb on - strand, within SMc02656 at 1167.544 kb on + strand at 1167.569 kb on + strand at 1167.569 kb on + strand at 1167.569 kb on + strand at 1167.570 kb on - strand at 1167.603 kb on + strand at 1167.684 kb on + strand at 1167.799 kb on + strand, within SMc02655 at 1167.799 kb on + strand, within SMc02655 at 1167.891 kb on + strand, within SMc02655 at 1168.079 kb on + strand, within SMc02655 at 1168.127 kb on + strand, within SMc02655
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,166,312 + SMc02659 0.85 +6.6 1,166,312 + SMc02659 0.85 +6.8 1,166,494 + +5.6 1,166,616 + +7.6 1,166,616 + +7.4 1,166,616 + +7.5 1,166,617 - +7.0 1,166,680 + +0.5 1,166,681 - -0.1 1,166,681 - -0.4 1,166,709 - +0.0 1,166,759 + SMc02658 0.28 -0.1 1,166,900 + SMc02658 0.88 -0.7 1,167,050 + SMc02657 0.44 -0.6 1,167,050 + SMc02657 0.44 -0.9 1,167,051 - SMc02657 0.45 -1.2 1,167,302 + +0.3 1,167,302 + -0.9 1,167,302 + +0.5 1,167,303 - +1.3 1,167,409 + SMc02656 0.45 -0.7 1,167,445 + SMc02656 0.69 -0.4 1,167,445 + SMc02656 0.69 -0.7 1,167,446 - SMc02656 0.69 -0.0 1,167,544 + -0.5 1,167,569 + +0.3 1,167,569 + -0.8 1,167,569 + +0.1 1,167,570 - +0.5 1,167,603 + -1.7 1,167,684 + -0.3 1,167,799 + SMc02655 0.13 -0.2 1,167,799 + SMc02655 0.13 -0.2 1,167,891 + SMc02655 0.27 +0.2 1,168,079 + SMc02655 0.57 +0.9 1,168,127 + SMc02655 0.64 -1.3
Or see this region's nucleotide sequence