Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02604 and SMc02605 are separated by 22 nucleotides SMc02605 and SMc02606 overlap by 8 nucleotides
SMc02604: SMc02604 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase, at 96,439 to 97,359
SMc02604
SMc02605: SMc02605 - sarcosine oxidase subunit gamma, at 97,382 to 97,915
SMc02605
SMc02606: SMc02606 - sarcosine oxidase subunit alpha, at 97,908 to 100,871
SMc02606
Position (kb) 97
98 Strain fitness (log2 ratio) -1
0
1 at 96.397 kb on - strand at 96.564 kb on + strand, within SMc02604 at 96.565 kb on - strand, within SMc02604 at 96.565 kb on - strand, within SMc02604 at 96.565 kb on - strand, within SMc02604 at 96.668 kb on + strand, within SMc02604 at 97.214 kb on + strand, within SMc02604 at 97.214 kb on + strand, within SMc02604 at 97.215 kb on - strand, within SMc02604 at 98.092 kb on + strand at 98.093 kb on - strand at 98.459 kb on - strand, within SMc02606 at 98.562 kb on + strand, within SMc02606 at 98.562 kb on + strand, within SMc02606 at 98.563 kb on - strand, within SMc02606 at 98.563 kb on - strand, within SMc02606 at 98.563 kb on - strand, within SMc02606 at 98.563 kb on - strand, within SMc02606 at 98.564 kb on + strand, within SMc02606 at 98.564 kb on + strand, within SMc02606 at 98.564 kb on + strand, within SMc02606 at 98.720 kb on - strand, within SMc02606 at 98.807 kb on + strand, within SMc02606 at 98.807 kb on + strand, within SMc02606 at 98.808 kb on - strand, within SMc02606 at 98.808 kb on - strand, within SMc02606 at 98.808 kb on - strand, within SMc02606 at 98.808 kb on - strand, within SMc02606 at 98.859 kb on + strand, within SMc02606
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 96,397 - -0.9 96,564 + SMc02604 0.14 -0.6 96,565 - SMc02604 0.14 -0.0 96,565 - SMc02604 0.14 +0.3 96,565 - SMc02604 0.14 +0.4 96,668 + SMc02604 0.25 -0.6 97,214 + SMc02604 0.84 +0.0 97,214 + SMc02604 0.84 +0.2 97,215 - SMc02604 0.84 -1.7 98,092 + -0.0 98,093 - -0.7 98,459 - SMc02606 0.19 -0.8 98,562 + SMc02606 0.22 -0.7 98,562 + SMc02606 0.22 -0.6 98,563 - SMc02606 0.22 -0.7 98,563 - SMc02606 0.22 +0.3 98,563 - SMc02606 0.22 -0.4 98,563 - SMc02606 0.22 +0.2 98,564 + SMc02606 0.22 -1.3 98,564 + SMc02606 0.22 +0.0 98,564 + SMc02606 0.22 -0.4 98,720 - SMc02606 0.27 +0.8 98,807 + SMc02606 0.30 +0.0 98,807 + SMc02606 0.30 -1.7 98,808 - SMc02606 0.30 +0.9 98,808 - SMc02606 0.30 -0.3 98,808 - SMc02606 0.30 -1.3 98,808 - SMc02606 0.30 -0.4 98,859 + SMc02606 0.32 -1.4
Or see this region's nucleotide sequence