Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02487 and SMc02486 are separated by 36 nucleotides SMc02486 and SMc02485 overlap by 4 nucleotides SMc02485 and SMc02484 overlap by 1 nucleotides SMc02484 and SMc02483 are separated by 255 nucleotides
SMc02487: SMc02487 - dihydrolipoamide dehydrogenase, at 3,308,114 to 3,309,520
SMc02487
SMc02486: SMc02486 - oxidoreductase, at 3,309,557 to 3,310,309
SMc02486
SMc02485: SMc02485 - signal peptide protein, at 3,310,306 to 3,310,806
SMc02485
SMc02484: SMc02484 - amino acid efflux transmembrane protein, at 3,310,806 to 3,311,450
SMc02484
SMc02483: SMc02483 - dihydrolipoamide succinyltransferase, at 3,311,706 to 3,312,959
SMc02483
Position (kb)
3310
3311 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3309.598 kb on - strand at 3309.598 kb on - strand at 3309.622 kb on - strand at 3309.765 kb on - strand, within SMc02486 at 3309.765 kb on - strand, within SMc02486 at 3309.835 kb on - strand, within SMc02486 at 3309.844 kb on - strand, within SMc02486 at 3309.844 kb on - strand, within SMc02486 at 3310.207 kb on - strand, within SMc02486 at 3310.207 kb on - strand, within SMc02486 at 3310.207 kb on - strand, within SMc02486 at 3310.354 kb on - strand at 3310.354 kb on - strand at 3310.354 kb on - strand at 3310.482 kb on - strand, within SMc02485 at 3310.695 kb on - strand, within SMc02485 at 3311.237 kb on - strand, within SMc02484 at 3311.279 kb on - strand, within SMc02484 at 3311.279 kb on - strand, within SMc02484 at 3311.279 kb on - strand, within SMc02484 at 3311.279 kb on - strand, within SMc02484 at 3311.441 kb on - strand at 3311.469 kb on - strand at 3311.518 kb on - strand at 3311.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,309,598 - +0.1 3,309,598 - -0.5 3,309,622 - +0.3 3,309,765 - SMc02486 0.28 +0.8 3,309,765 - SMc02486 0.28 +0.8 3,309,835 - SMc02486 0.37 +0.1 3,309,844 - SMc02486 0.38 -0.0 3,309,844 - SMc02486 0.38 +0.3 3,310,207 - SMc02486 0.86 -0.3 3,310,207 - SMc02486 0.86 +1.0 3,310,207 - SMc02486 0.86 -1.2 3,310,354 - +0.2 3,310,354 - +1.1 3,310,354 - -0.2 3,310,482 - SMc02485 0.35 -1.1 3,310,695 - SMc02485 0.78 -1.7 3,311,237 - SMc02484 0.67 -0.9 3,311,279 - SMc02484 0.73 -1.8 3,311,279 - SMc02484 0.73 -3.6 3,311,279 - SMc02484 0.73 -1.2 3,311,279 - SMc02484 0.73 -1.7 3,311,441 - +0.4 3,311,469 - +1.7 3,311,518 - -0.7 3,311,692 - -1.0
Or see this region's nucleotide sequence