Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02441 and SMc02442 overlap by 4 nucleotides SMc02442 and SMc02443 are separated by 96 nucleotides SMc02443 and SMc02444 are separated by 39 nucleotides SMc02444 and SMc02445 are separated by 194 nucleotides
SMc02441: SMc02441 - hypothetical protein, at 2,825,690 to 2,826,118
SMc02441
SMc02442: SMc02442 - hydrolase, at 2,826,115 to 2,826,972
SMc02442
SMc02443: SMc02443 - glutaredoxin, at 2,827,069 to 2,827,335
SMc02443
SMc02444: SMc02444 - hypothetical protein, at 2,827,375 to 2,828,121
SMc02444
SMc02445: SMc02445 - hypothetical protein, at 2,828,316 to 2,829,212
SMc02445
Position (kb)
2827
2828 Strain fitness (log2 ratio)
-1
0
1
2 at 2826.108 kb on + strand at 2826.108 kb on + strand at 2826.109 kb on - strand at 2826.358 kb on - strand, within SMc02442 at 2826.506 kb on + strand, within SMc02442 at 2826.506 kb on + strand, within SMc02442 at 2826.506 kb on + strand, within SMc02442 at 2826.507 kb on - strand, within SMc02442 at 2826.550 kb on - strand, within SMc02442 at 2826.558 kb on + strand, within SMc02442 at 2826.863 kb on + strand, within SMc02442 at 2826.863 kb on + strand, within SMc02442 at 2826.863 kb on + strand, within SMc02442 at 2826.863 kb on + strand, within SMc02442 at 2826.864 kb on - strand, within SMc02442 at 2826.864 kb on - strand, within SMc02442 at 2827.010 kb on + strand at 2827.010 kb on + strand at 2827.220 kb on + strand, within SMc02443 at 2827.220 kb on + strand, within SMc02443 at 2827.220 kb on + strand, within SMc02443 at 2827.220 kb on + strand, within SMc02443 at 2827.220 kb on + strand, within SMc02443 at 2827.221 kb on - strand, within SMc02443 at 2827.286 kb on + strand, within SMc02443 at 2827.287 kb on - strand, within SMc02443 at 2827.306 kb on - strand, within SMc02443 at 2827.307 kb on + strand, within SMc02443 at 2827.307 kb on + strand, within SMc02443 at 2827.307 kb on + strand, within SMc02443 at 2827.308 kb on - strand, within SMc02443 at 2827.378 kb on + strand at 2827.379 kb on - strand at 2827.379 kb on - strand at 2827.380 kb on + strand at 2827.380 kb on + strand at 2827.381 kb on - strand at 2827.479 kb on + strand, within SMc02444 at 2827.480 kb on - strand, within SMc02444 at 2827.480 kb on - strand, within SMc02444 at 2827.481 kb on + strand, within SMc02444 at 2827.482 kb on - strand, within SMc02444 at 2827.793 kb on + strand, within SMc02444 at 2827.970 kb on + strand, within SMc02444 at 2828.028 kb on - strand, within SMc02444 at 2828.163 kb on - strand at 2828.187 kb on + strand at 2828.194 kb on + strand at 2828.194 kb on + strand at 2828.195 kb on - strand at 2828.228 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,826,108 + -0.7 2,826,108 + +0.2 2,826,109 - +0.0 2,826,358 - SMc02442 0.28 +0.6 2,826,506 + SMc02442 0.46 +1.0 2,826,506 + SMc02442 0.46 +0.8 2,826,506 + SMc02442 0.46 -0.6 2,826,507 - SMc02442 0.46 -0.0 2,826,550 - SMc02442 0.51 -0.1 2,826,558 + SMc02442 0.52 -1.4 2,826,863 + SMc02442 0.87 +0.5 2,826,863 + SMc02442 0.87 +0.4 2,826,863 + SMc02442 0.87 -0.4 2,826,863 + SMc02442 0.87 +1.0 2,826,864 - SMc02442 0.87 +0.2 2,826,864 - SMc02442 0.87 +0.4 2,827,010 + +0.2 2,827,010 + +0.6 2,827,220 + SMc02443 0.57 +0.7 2,827,220 + SMc02443 0.57 +0.6 2,827,220 + SMc02443 0.57 +0.3 2,827,220 + SMc02443 0.57 -0.3 2,827,220 + SMc02443 0.57 +0.4 2,827,221 - SMc02443 0.57 +0.1 2,827,286 + SMc02443 0.81 +1.8 2,827,287 - SMc02443 0.82 -0.1 2,827,306 - SMc02443 0.89 +0.6 2,827,307 + SMc02443 0.89 -0.6 2,827,307 + SMc02443 0.89 +0.1 2,827,307 + SMc02443 0.89 +0.4 2,827,308 - SMc02443 0.90 +0.3 2,827,378 + +0.8 2,827,379 - +0.1 2,827,379 - -0.0 2,827,380 + -0.5 2,827,380 + +0.5 2,827,381 - +0.9 2,827,479 + SMc02444 0.14 +1.1 2,827,480 - SMc02444 0.14 -0.4 2,827,480 - SMc02444 0.14 +1.7 2,827,481 + SMc02444 0.14 -0.1 2,827,482 - SMc02444 0.14 +0.1 2,827,793 + SMc02444 0.56 +0.8 2,827,970 + SMc02444 0.80 +0.6 2,828,028 - SMc02444 0.87 +0.5 2,828,163 - -0.4 2,828,187 + +0.4 2,828,194 + -0.1 2,828,194 + +0.1 2,828,195 - +0.9 2,828,228 + -1.4
Or see this region's nucleotide sequence