Strain Fitness in Sinorhizobium meliloti 1021 around SMc02440

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02439 and SMc02440 are separated by 151 nucleotidesSMc02440 and SMc02441 are separated by 12 nucleotidesSMc02441 and SMc02442 overlap by 4 nucleotides SMc02439: SMc02439 - hypothetical protein, at 2,824,234 to 2,824,779 SMc02439 SMc02440: SMc02440 - 3-demethylubiquinone-9 3-methyltransferase, at 2,824,931 to 2,825,677 SMc02440 SMc02441: SMc02441 - hypothetical protein, at 2,825,690 to 2,826,118 SMc02441 SMc02442: SMc02442 - hydrolase, at 2,826,115 to 2,826,972 SMc02442 Position (kb) 2824 2825 2826Strain fitness (log2 ratio) -1 0 1at 2824.336 kb on + strand, within SMc02439at 2824.336 kb on + strand, within SMc02439at 2824.336 kb on + strand, within SMc02439at 2824.336 kb on + strand, within SMc02439at 2824.337 kb on - strand, within SMc02439at 2824.337 kb on - strand, within SMc02439at 2824.337 kb on - strand, within SMc02439at 2824.390 kb on + strand, within SMc02439at 2824.390 kb on + strand, within SMc02439at 2824.391 kb on - strand, within SMc02439at 2824.391 kb on - strand, within SMc02439at 2824.391 kb on - strand, within SMc02439at 2824.408 kb on + strand, within SMc02439at 2824.462 kb on + strand, within SMc02439at 2824.462 kb on + strand, within SMc02439at 2824.462 kb on + strand, within SMc02439at 2824.463 kb on - strand, within SMc02439at 2826.108 kb on + strandat 2826.108 kb on + strandat 2826.109 kb on - strandat 2826.358 kb on - strand, within SMc02442at 2826.506 kb on + strand, within SMc02442at 2826.506 kb on + strand, within SMc02442at 2826.506 kb on + strand, within SMc02442at 2826.507 kb on - strand, within SMc02442at 2826.550 kb on - strand, within SMc02442at 2826.558 kb on + strand, within SMc02442

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,824,336 + SMc02439 0.19 +0.5
2,824,336 + SMc02439 0.19 +0.6
2,824,336 + SMc02439 0.19 -0.0
2,824,336 + SMc02439 0.19 +0.5
2,824,337 - SMc02439 0.19 -0.0
2,824,337 - SMc02439 0.19 +0.3
2,824,337 - SMc02439 0.19 +0.4
2,824,390 + SMc02439 0.29 +0.1
2,824,390 + SMc02439 0.29 +1.7
2,824,391 - SMc02439 0.29 -0.3
2,824,391 - SMc02439 0.29 -1.6
2,824,391 - SMc02439 0.29 -0.9
2,824,408 + SMc02439 0.32 +0.4
2,824,462 + SMc02439 0.42 +1.0
2,824,462 + SMc02439 0.42 +0.4
2,824,462 + SMc02439 0.42 -0.5
2,824,463 - SMc02439 0.42 +1.4
2,826,108 + -0.7
2,826,108 + +0.2
2,826,109 - +0.0
2,826,358 - SMc02442 0.28 +0.6
2,826,506 + SMc02442 0.46 +1.0
2,826,506 + SMc02442 0.46 +0.8
2,826,506 + SMc02442 0.46 -0.6
2,826,507 - SMc02442 0.46 -0.0
2,826,550 - SMc02442 0.51 -0.1
2,826,558 + SMc02442 0.52 -1.4

Or see this region's nucleotide sequence