Strain Fitness in Sinorhizobium meliloti 1021 around SMc02440
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
2,824,336 | + | SMc02439 | 0.19 | +0.5 | |
2,824,336 | + | SMc02439 | 0.19 | +0.6 | |
2,824,336 | + | SMc02439 | 0.19 | -0.0 | |
2,824,336 | + | SMc02439 | 0.19 | +0.5 | |
2,824,337 | - | SMc02439 | 0.19 | -0.0 | |
2,824,337 | - | SMc02439 | 0.19 | +0.3 | |
2,824,337 | - | SMc02439 | 0.19 | +0.4 | |
2,824,390 | + | SMc02439 | 0.29 | +0.1 | |
2,824,390 | + | SMc02439 | 0.29 | +1.7 | |
2,824,391 | - | SMc02439 | 0.29 | -0.3 | |
2,824,391 | - | SMc02439 | 0.29 | -1.6 | |
2,824,391 | - | SMc02439 | 0.29 | -0.9 | |
2,824,408 | + | SMc02439 | 0.32 | +0.4 | |
2,824,462 | + | SMc02439 | 0.42 | +1.0 | |
2,824,462 | + | SMc02439 | 0.42 | +0.4 | |
2,824,462 | + | SMc02439 | 0.42 | -0.5 | |
2,824,463 | - | SMc02439 | 0.42 | +1.4 | |
2,826,108 | + | -0.7 | |||
2,826,108 | + | +0.2 | |||
2,826,109 | - | +0.0 | |||
2,826,358 | - | SMc02442 | 0.28 | +0.6 | |
2,826,506 | + | SMc02442 | 0.46 | +1.0 | |
2,826,506 | + | SMc02442 | 0.46 | +0.8 | |
2,826,506 | + | SMc02442 | 0.46 | -0.6 | |
2,826,507 | - | SMc02442 | 0.46 | -0.0 | |
2,826,550 | - | SMc02442 | 0.51 | -0.1 | |
2,826,558 | + | SMc02442 | 0.52 | -1.4 |
Or see this region's nucleotide sequence