Strain Fitness in Sinorhizobium meliloti 1021 around SMc02439

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02438 and SMc02439 are separated by 348 nucleotidesSMc02439 and SMc02440 are separated by 151 nucleotidesSMc02440 and SMc02441 are separated by 12 nucleotides SMc02438: SMc02438 - aspartate kinase, at 2,822,611 to 2,823,885 SMc02438 SMc02439: SMc02439 - hypothetical protein, at 2,824,234 to 2,824,779 SMc02439 SMc02440: SMc02440 - 3-demethylubiquinone-9 3-methyltransferase, at 2,824,931 to 2,825,677 SMc02440 SMc02441: SMc02441 - hypothetical protein, at 2,825,690 to 2,826,118 SMc02441 Position (kb) 2824 2825Strain fitness (log2 ratio) -1 0 1at 2823.900 kb on - strandat 2824.336 kb on + strand, within SMc02439at 2824.336 kb on + strand, within SMc02439at 2824.336 kb on + strand, within SMc02439at 2824.336 kb on + strand, within SMc02439at 2824.337 kb on - strand, within SMc02439at 2824.337 kb on - strand, within SMc02439at 2824.337 kb on - strand, within SMc02439at 2824.390 kb on + strand, within SMc02439at 2824.390 kb on + strand, within SMc02439at 2824.391 kb on - strand, within SMc02439at 2824.391 kb on - strand, within SMc02439at 2824.391 kb on - strand, within SMc02439at 2824.408 kb on + strand, within SMc02439at 2824.462 kb on + strand, within SMc02439at 2824.462 kb on + strand, within SMc02439at 2824.462 kb on + strand, within SMc02439at 2824.463 kb on - strand, within SMc02439

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
2,823,900 - -0.6
2,824,336 + SMc02439 0.19 +0.5
2,824,336 + SMc02439 0.19 +0.6
2,824,336 + SMc02439 0.19 -0.0
2,824,336 + SMc02439 0.19 +0.5
2,824,337 - SMc02439 0.19 -0.0
2,824,337 - SMc02439 0.19 +0.3
2,824,337 - SMc02439 0.19 +0.4
2,824,390 + SMc02439 0.29 +0.1
2,824,390 + SMc02439 0.29 +1.7
2,824,391 - SMc02439 0.29 -0.3
2,824,391 - SMc02439 0.29 -1.6
2,824,391 - SMc02439 0.29 -0.9
2,824,408 + SMc02439 0.32 +0.4
2,824,462 + SMc02439 0.42 +1.0
2,824,462 + SMc02439 0.42 +0.4
2,824,462 + SMc02439 0.42 -0.5
2,824,463 - SMc02439 0.42 +1.4

Or see this region's nucleotide sequence