Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02174 and SMc02173 are separated by 66 nucleotides SMc02173 and SMc02172 are separated by 4 nucleotides SMc02172 and SMc02171 are separated by 351 nucleotides
SMc02174: SMc02174 - hypothetical protein, at 521,374 to 521,811
SMc02174
SMc02173: SMc02173 - hypothetical protein, at 521,878 to 522,306
SMc02173
SMc02172: SMc02172 - transcriptional regulator, at 522,311 to 523,540
SMc02172
SMc02171: SMc02171 - periplasmic binding ABC transporter protein, at 523,892 to 524,917
SMc02171
Position (kb) 522
523
524 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 521.311 kb on + strand at 521.333 kb on + strand at 521.333 kb on + strand at 521.334 kb on - strand at 521.334 kb on - strand at 521.334 kb on - strand at 521.429 kb on + strand, within SMc02174 at 521.430 kb on - strand, within SMc02174 at 521.475 kb on + strand, within SMc02174 at 521.590 kb on + strand at 521.591 kb on - strand, within SMc02174 at 521.885 kb on + strand at 521.885 kb on + strand at 521.885 kb on + strand at 521.885 kb on + strand at 521.885 kb on + strand at 521.886 kb on - strand at 521.918 kb on + strand at 521.973 kb on - strand, within SMc02173 at 522.137 kb on - strand, within SMc02173 at 522.209 kb on + strand, within SMc02173 at 522.292 kb on + strand at 522.293 kb on - strand at 522.313 kb on - strand at 522.597 kb on - strand, within SMc02172 at 522.837 kb on + strand, within SMc02172 at 522.837 kb on + strand, within SMc02172 at 522.838 kb on - strand, within SMc02172 at 522.844 kb on - strand, within SMc02172 at 523.147 kb on - strand, within SMc02172 at 523.147 kb on - strand, within SMc02172 at 523.150 kb on + strand, within SMc02172 at 523.150 kb on + strand, within SMc02172 at 523.150 kb on + strand, within SMc02172 at 523.150 kb on + strand, within SMc02172 at 523.150 kb on + strand, within SMc02172 at 523.150 kb on + strand, within SMc02172 at 523.151 kb on - strand, within SMc02172 at 523.151 kb on - strand, within SMc02172 at 523.151 kb on - strand, within SMc02172 at 523.151 kb on - strand, within SMc02172 at 523.151 kb on - strand, within SMc02172 at 523.370 kb on + strand, within SMc02172 at 523.447 kb on + strand at 523.448 kb on - strand at 523.449 kb on + strand at 523.603 kb on - strand at 523.607 kb on + strand at 523.891 kb on - strand at 524.078 kb on + strand, within SMc02171 at 524.078 kb on + strand, within SMc02171 at 524.079 kb on - strand, within SMc02171 at 524.079 kb on - strand, within SMc02171
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 521,311 + +0.6 521,333 + -0.6 521,333 + +0.8 521,334 - +5.2 521,334 - +0.4 521,334 - -0.6 521,429 + SMc02174 0.13 -0.8 521,430 - SMc02174 0.13 -0.3 521,475 + SMc02174 0.23 -0.8 521,590 + +0.6 521,591 - SMc02174 0.50 +0.0 521,885 + +0.5 521,885 + +0.1 521,885 + +0.1 521,885 + +0.1 521,885 + +1.6 521,886 - +0.1 521,918 + -0.5 521,973 - SMc02173 0.22 -0.3 522,137 - SMc02173 0.60 +0.8 522,209 + SMc02173 0.77 +0.7 522,292 + -1.3 522,293 - -0.6 522,313 - +0.0 522,597 - SMc02172 0.23 -1.5 522,837 + SMc02172 0.43 +0.4 522,837 + SMc02172 0.43 -0.7 522,838 - SMc02172 0.43 +0.2 522,844 - SMc02172 0.43 +1.6 523,147 - SMc02172 0.68 -0.9 523,147 - SMc02172 0.68 +0.3 523,150 + SMc02172 0.68 -1.3 523,150 + SMc02172 0.68 -1.1 523,150 + SMc02172 0.68 -1.3 523,150 + SMc02172 0.68 -1.8 523,150 + SMc02172 0.68 -1.5 523,150 + SMc02172 0.68 -0.9 523,151 - SMc02172 0.68 -2.0 523,151 - SMc02172 0.68 -1.0 523,151 - SMc02172 0.68 -1.5 523,151 - SMc02172 0.68 -0.7 523,151 - SMc02172 0.68 -1.7 523,370 + SMc02172 0.86 -0.1 523,447 + -1.3 523,448 - -2.1 523,449 + +0.5 523,603 - -0.5 523,607 + -0.1 523,891 - -0.7 524,078 + SMc02171 0.18 +1.6 524,078 + SMc02171 0.18 -1.7 524,079 - SMc02171 0.18 +0.2 524,079 - SMc02171 0.18 -0.1
Or see this region's nucleotide sequence