Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02109 and SMc02108 are separated by 72 nucleotides SMc02108 and SMc02107 are separated by 5 nucleotides SMc02107 and SMc02106 are separated by 253 nucleotides SMc02106 and SMc02105 are separated by 35 nucleotides
SMc02109: SMc02109 - ATP-dependent Clp protease ATP-binding subunit protein, at 1,599,831 to 1,602,347
SMc02109
SMc02108: SMc02108 - hypothetical protein, at 1,602,420 to 1,603,166
SMc02108
SMc02107: SMc02107 - hypothetical protein, at 1,603,172 to 1,603,507
SMc02107
SMc02106: SMc02106 - hypothetical protein, at 1,603,761 to 1,604,180
SMc02106
SMc02105: SMc02105 - hypothetical protein, at 1,604,216 to 1,605,403
SMc02105
Position (kb)
1603
1604 Strain fitness (log2 ratio)
-2
-1
0
1 at 1602.346 kb on - strand at 1602.384 kb on + strand at 1602.415 kb on - strand at 1602.490 kb on + strand at 1602.508 kb on + strand, within SMc02108 at 1602.508 kb on + strand, within SMc02108 at 1602.973 kb on - strand, within SMc02108 at 1603.017 kb on + strand, within SMc02108 at 1603.059 kb on + strand, within SMc02108 at 1603.190 kb on + strand at 1603.191 kb on - strand at 1603.343 kb on - strand, within SMc02107 at 1603.514 kb on - strand at 1603.525 kb on - strand at 1603.558 kb on + strand at 1603.634 kb on + strand at 1603.762 kb on + strand at 1603.801 kb on - strand at 1603.801 kb on - strand at 1603.801 kb on - strand at 1604.142 kb on + strand at 1604.143 kb on - strand at 1604.143 kb on - strand at 1604.157 kb on - strand at 1604.171 kb on - strand at 1604.308 kb on - strand at 1604.377 kb on - strand, within SMc02105 at 1604.445 kb on + strand, within SMc02105 at 1604.463 kb on + strand, within SMc02105 at 1604.464 kb on - strand, within SMc02105
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,602,346 - -0.5 1,602,384 + -1.8 1,602,415 - +1.6 1,602,490 + -0.2 1,602,508 + SMc02108 0.12 -0.3 1,602,508 + SMc02108 0.12 -0.3 1,602,973 - SMc02108 0.74 +0.5 1,603,017 + SMc02108 0.80 -1.5 1,603,059 + SMc02108 0.86 +0.7 1,603,190 + +0.2 1,603,191 - +0.7 1,603,343 - SMc02107 0.51 -2.1 1,603,514 - -0.1 1,603,525 - -0.6 1,603,558 + -0.0 1,603,634 + +0.7 1,603,762 + -0.1 1,603,801 - +0.3 1,603,801 - +0.2 1,603,801 - +0.0 1,604,142 + +0.0 1,604,143 - +0.6 1,604,143 - -0.6 1,604,157 - -2.4 1,604,171 - -0.2 1,604,308 - -0.2 1,604,377 - SMc02105 0.14 +0.7 1,604,445 + SMc02105 0.19 -0.2 1,604,463 + SMc02105 0.21 +0.6 1,604,464 - SMc02105 0.21 +0.2
Or see this region's nucleotide sequence