Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02057 and SMc02056 overlap by 4 nucleotides SMc02056 and SMc02055 are separated by 21 nucleotides SMc02055 and SMc02054 are separated by 94 nucleotides
SMc02057: SMc02057 - preprotein translocase subunit SecD/SecF, at 1,660,365 to 1,662,941
SMc02057
SMc02056: SMc02056 - hypothetical protein, at 1,662,938 to 1,663,330
SMc02056
SMc02055: SMc02055 - phytoene synthase, at 1,663,352 to 1,664,194
SMc02055
SMc02054: SMc02054 - hypothetical protein, at 1,664,289 to 1,664,744
SMc02054
Position (kb)
1662
1663
1664 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1662.042 kb on - strand, within SMc02057 at 1662.047 kb on + strand, within SMc02057 at 1662.047 kb on + strand, within SMc02057 at 1662.330 kb on + strand, within SMc02057 at 1662.330 kb on + strand, within SMc02057 at 1662.330 kb on + strand, within SMc02057 at 1662.330 kb on + strand, within SMc02057 at 1662.330 kb on + strand, within SMc02057 at 1662.331 kb on - strand, within SMc02057 at 1662.331 kb on - strand, within SMc02057 at 1662.331 kb on - strand, within SMc02057 at 1662.331 kb on - strand, within SMc02057 at 1662.331 kb on - strand, within SMc02057 at 1662.432 kb on + strand, within SMc02057 at 1662.432 kb on + strand, within SMc02057 at 1662.607 kb on - strand, within SMc02057 at 1662.742 kb on - strand at 1662.742 kb on - strand at 1662.742 kb on - strand at 1662.790 kb on + strand at 1662.825 kb on + strand at 1662.825 kb on + strand at 1663.074 kb on + strand, within SMc02056 at 1663.075 kb on - strand, within SMc02056 at 1663.075 kb on - strand, within SMc02056 at 1663.075 kb on - strand, within SMc02056 at 1663.076 kb on + strand at 1663.077 kb on - strand, within SMc02056 at 1663.077 kb on - strand, within SMc02056 at 1663.274 kb on + strand, within SMc02056 at 1663.274 kb on + strand, within SMc02056 at 1663.274 kb on + strand, within SMc02056 at 1663.274 kb on + strand, within SMc02056 at 1663.275 kb on - strand, within SMc02056 at 1663.276 kb on + strand, within SMc02056 at 1663.276 kb on + strand, within SMc02056 at 1663.463 kb on + strand, within SMc02055 at 1663.679 kb on + strand, within SMc02055 at 1663.719 kb on - strand, within SMc02055 at 1663.719 kb on - strand, within SMc02055 at 1664.242 kb on - strand at 1664.242 kb on - strand at 1664.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,662,042 - SMc02057 0.65 +1.2 1,662,047 + SMc02057 0.65 -1.3 1,662,047 + SMc02057 0.65 -0.2 1,662,330 + SMc02057 0.76 +0.6 1,662,330 + SMc02057 0.76 -0.7 1,662,330 + SMc02057 0.76 +0.0 1,662,330 + SMc02057 0.76 +0.6 1,662,330 + SMc02057 0.76 -0.1 1,662,331 - SMc02057 0.76 +1.0 1,662,331 - SMc02057 0.76 +1.5 1,662,331 - SMc02057 0.76 +1.5 1,662,331 - SMc02057 0.76 +2.3 1,662,331 - SMc02057 0.76 +0.9 1,662,432 + SMc02057 0.80 -0.3 1,662,432 + SMc02057 0.80 -0.2 1,662,607 - SMc02057 0.87 +2.0 1,662,742 - +2.6 1,662,742 - +2.6 1,662,742 - +2.1 1,662,790 + -0.5 1,662,825 + -0.5 1,662,825 + +0.5 1,663,074 + SMc02056 0.35 -1.3 1,663,075 - SMc02056 0.35 +3.2 1,663,075 - SMc02056 0.35 +3.6 1,663,075 - SMc02056 0.35 +1.4 1,663,076 + -0.2 1,663,077 - SMc02056 0.35 +3.1 1,663,077 - SMc02056 0.35 +2.6 1,663,274 + SMc02056 0.85 +0.7 1,663,274 + SMc02056 0.85 -0.3 1,663,274 + SMc02056 0.85 -0.2 1,663,274 + SMc02056 0.85 +0.1 1,663,275 - SMc02056 0.86 +3.8 1,663,276 + SMc02056 0.86 +0.3 1,663,276 + SMc02056 0.86 +0.5 1,663,463 + SMc02055 0.13 +3.4 1,663,679 + SMc02055 0.39 +3.4 1,663,719 - SMc02055 0.44 +1.8 1,663,719 - SMc02055 0.44 +1.9 1,664,242 - +1.2 1,664,242 - -0.0 1,664,272 - +0.0
Or see this region's nucleotide sequence