Strain Fitness in Sinorhizobium meliloti 1021 around SMc01929

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01927 and SMc01928 overlap by 4 nucleotidesSMc01928 and SMc01929 are separated by 27 nucleotidesSMc01929 and SMc01930 are separated by 58 nucleotidesSMc01930 and SMc01931 are separated by 22 nucleotidesSMc01931 and SMc01932 are separated by 86 nucleotides SMc01927: SMc01927 - NADH dehydrogenase subunit N, at 1,392,670 to 1,394,112 SMc01927 SMc01928: SMc01928 - biotin--[acetyl-CoA-carboxylase] synthetase, at 1,394,109 to 1,394,876 SMc01928 SMc01929: SMc01929 - hypothetical protein, at 1,394,904 to 1,396,571 SMc01929 SMc01930: SMc01930 - hypothetical protein, at 1,396,630 to 1,397,034 SMc01930 SMc01931: SMc01931 - hypothetical protein, at 1,397,057 to 1,397,443 SMc01931 SMc01932: SMc01932 - hypothetical protein, at 1,397,530 to 1,397,895 SMc01932 Position (kb) 1394 1395 1396 1397Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1395.192 kb on + strand, within SMc01929at 1396.041 kb on + strand, within SMc01929at 1396.041 kb on + strand, within SMc01929at 1396.169 kb on - strand, within SMc01929at 1396.225 kb on - strand, within SMc01929at 1396.267 kb on + strand, within SMc01929at 1396.318 kb on + strand, within SMc01929at 1396.417 kb on - strandat 1396.694 kb on - strand, within SMc01930at 1396.719 kb on + strand, within SMc01930at 1396.866 kb on + strand, within SMc01930at 1396.874 kb on - strandat 1397.081 kb on - strandat 1397.082 kb on + strandat 1397.082 kb on + strandat 1397.083 kb on - strandat 1397.113 kb on + strand, within SMc01931at 1397.113 kb on + strand, within SMc01931at 1397.113 kb on + strand, within SMc01931at 1397.114 kb on - strand, within SMc01931at 1397.114 kb on - strand, within SMc01931at 1397.201 kb on + strand, within SMc01931at 1397.202 kb on - strand, within SMc01931at 1397.375 kb on + strand, within SMc01931at 1397.496 kb on + strandat 1397.497 kb on - strandat 1397.497 kb on - strandat 1397.540 kb on + strandat 1397.552 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,395,192 + SMc01929 0.17 -0.5
1,396,041 + SMc01929 0.68 -1.1
1,396,041 + SMc01929 0.68 -2.7
1,396,169 - SMc01929 0.76 -1.3
1,396,225 - SMc01929 0.79 -1.0
1,396,267 + SMc01929 0.82 -0.6
1,396,318 + SMc01929 0.85 -2.7
1,396,417 - -0.3
1,396,694 - SMc01930 0.16 +0.3
1,396,719 + SMc01930 0.22 +0.8
1,396,866 + SMc01930 0.58 -1.7
1,396,874 - +0.8
1,397,081 - +0.9
1,397,082 + -0.3
1,397,082 + +0.8
1,397,083 - +2.2
1,397,113 + SMc01931 0.14 -0.2
1,397,113 + SMc01931 0.14 -1.0
1,397,113 + SMc01931 0.14 +0.6
1,397,114 - SMc01931 0.15 +2.8
1,397,114 - SMc01931 0.15 +0.6
1,397,201 + SMc01931 0.37 -0.4
1,397,202 - SMc01931 0.37 -1.7
1,397,375 + SMc01931 0.82 +0.4
1,397,496 + +0.8
1,397,497 - -2.5
1,397,497 - +0.7
1,397,540 + +0.2
1,397,552 - +0.3

Or see this region's nucleotide sequence