Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01927 and SMc01928 overlap by 4 nucleotides SMc01928 and SMc01929 are separated by 27 nucleotides SMc01929 and SMc01930 are separated by 58 nucleotides SMc01930 and SMc01931 are separated by 22 nucleotides SMc01931 and SMc01932 are separated by 86 nucleotides
SMc01927: SMc01927 - NADH dehydrogenase subunit N, at 1,392,670 to 1,394,112
SMc01927
SMc01928: SMc01928 - biotin--[acetyl-CoA-carboxylase] synthetase, at 1,394,109 to 1,394,876
SMc01928
SMc01929: SMc01929 - hypothetical protein, at 1,394,904 to 1,396,571
SMc01929
SMc01930: SMc01930 - hypothetical protein, at 1,396,630 to 1,397,034
SMc01930
SMc01931: SMc01931 - hypothetical protein, at 1,397,057 to 1,397,443
SMc01931
SMc01932: SMc01932 - hypothetical protein, at 1,397,530 to 1,397,895
SMc01932
Position (kb)
1394
1395
1396
1397 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1395.192 kb on + strand, within SMc01929 at 1396.041 kb on + strand, within SMc01929 at 1396.041 kb on + strand, within SMc01929 at 1396.169 kb on - strand, within SMc01929 at 1396.225 kb on - strand, within SMc01929 at 1396.267 kb on + strand, within SMc01929 at 1396.318 kb on + strand, within SMc01929 at 1396.417 kb on - strand at 1396.694 kb on - strand, within SMc01930 at 1396.719 kb on + strand, within SMc01930 at 1396.866 kb on + strand, within SMc01930 at 1396.874 kb on - strand at 1397.081 kb on - strand at 1397.082 kb on + strand at 1397.082 kb on + strand at 1397.083 kb on - strand at 1397.113 kb on + strand, within SMc01931 at 1397.113 kb on + strand, within SMc01931 at 1397.113 kb on + strand, within SMc01931 at 1397.114 kb on - strand, within SMc01931 at 1397.114 kb on - strand, within SMc01931 at 1397.201 kb on + strand, within SMc01931 at 1397.202 kb on - strand, within SMc01931 at 1397.375 kb on + strand, within SMc01931 at 1397.496 kb on + strand at 1397.497 kb on - strand at 1397.497 kb on - strand at 1397.540 kb on + strand at 1397.552 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,395,192 + SMc01929 0.17 -0.5 1,396,041 + SMc01929 0.68 -1.1 1,396,041 + SMc01929 0.68 -2.7 1,396,169 - SMc01929 0.76 -1.3 1,396,225 - SMc01929 0.79 -1.0 1,396,267 + SMc01929 0.82 -0.6 1,396,318 + SMc01929 0.85 -2.7 1,396,417 - -0.3 1,396,694 - SMc01930 0.16 +0.3 1,396,719 + SMc01930 0.22 +0.8 1,396,866 + SMc01930 0.58 -1.7 1,396,874 - +0.8 1,397,081 - +0.9 1,397,082 + -0.3 1,397,082 + +0.8 1,397,083 - +2.2 1,397,113 + SMc01931 0.14 -0.2 1,397,113 + SMc01931 0.14 -1.0 1,397,113 + SMc01931 0.14 +0.6 1,397,114 - SMc01931 0.15 +2.8 1,397,114 - SMc01931 0.15 +0.6 1,397,201 + SMc01931 0.37 -0.4 1,397,202 - SMc01931 0.37 -1.7 1,397,375 + SMc01931 0.82 +0.4 1,397,496 + +0.8 1,397,497 - -2.5 1,397,497 - +0.7 1,397,540 + +0.2 1,397,552 - +0.3
Or see this region's nucleotide sequence