Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01831 and SMc01832 overlap by 8 nucleotides SMc01832 and SMc01833 are separated by 1 nucleotides SMc01833 and SMc01834 are separated by 189 nucleotides SMc01834 and SMc01995 are separated by 289 nucleotides SMc01995 and SMc01836 overlap by 17 nucleotides
SMc01831: SMc01831 - urease accessory protein, at 2,657,252 to 2,657,923
SMc01831
SMc01832: SMc01832 - urease accessory protein UreE, at 2,657,916 to 2,658,380
SMc01832
SMc01833: SMc01833 - hypothetical protein, at 2,658,382 to 2,658,678
SMc01833
SMc01834: SMc01834 - hypothetical protein, at 2,658,868 to 2,659,410
SMc01834
SMc01995: SMc01995 - hypothetical protein, at 2,659,700 to 2,660,086
SMc01995
SMc01836: SMc01836 - hypothetical protein, at 2,660,070 to 2,660,387
SMc01836
Position (kb)
2658
2659
2660 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 2657.882 kb on - strand at 2657.906 kb on - strand at 2657.930 kb on - strand at 2657.930 kb on - strand at 2658.148 kb on + strand, within SMc01832 at 2658.496 kb on - strand, within SMc01833 at 2658.566 kb on + strand, within SMc01833 at 2658.567 kb on - strand, within SMc01833 at 2658.659 kb on + strand at 2658.659 kb on + strand at 2658.660 kb on - strand at 2658.660 kb on - strand at 2658.660 kb on - strand at 2658.671 kb on + strand at 2658.671 kb on + strand at 2658.672 kb on - strand at 2658.766 kb on - strand at 2658.957 kb on - strand, within SMc01834 at 2658.957 kb on - strand, within SMc01834 at 2659.010 kb on + strand, within SMc01834 at 2659.172 kb on + strand, within SMc01834 at 2659.173 kb on - strand, within SMc01834 at 2659.173 kb on - strand, within SMc01834 at 2659.235 kb on + strand, within SMc01834 at 2659.302 kb on - strand, within SMc01834 at 2659.314 kb on + strand, within SMc01834 at 2659.315 kb on - strand, within SMc01834 at 2659.381 kb on + strand at 2659.382 kb on - strand at 2659.419 kb on - strand at 2659.619 kb on + strand at 2659.620 kb on - strand at 2659.684 kb on + strand at 2659.717 kb on + strand at 2659.718 kb on - strand at 2659.777 kb on - strand, within SMc01995 at 2660.243 kb on + strand, within SMc01836 at 2660.244 kb on - strand, within SMc01836 at 2660.244 kb on - strand, within SMc01836 at 2660.269 kb on - strand, within SMc01836
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,657,882 - +3.0 2,657,906 - -0.2 2,657,930 - -0.3 2,657,930 - -0.2 2,658,148 + SMc01832 0.50 +0.0 2,658,496 - SMc01833 0.38 +0.0 2,658,566 + SMc01833 0.62 +0.3 2,658,567 - SMc01833 0.62 +0.1 2,658,659 + +1.4 2,658,659 + +0.2 2,658,660 - -0.1 2,658,660 - +0.3 2,658,660 - -0.3 2,658,671 + -0.3 2,658,671 + -0.6 2,658,672 - +0.0 2,658,766 - -0.5 2,658,957 - SMc01834 0.16 -0.2 2,658,957 - SMc01834 0.16 -0.4 2,659,010 + SMc01834 0.26 -0.1 2,659,172 + SMc01834 0.56 +0.2 2,659,173 - SMc01834 0.56 +0.4 2,659,173 - SMc01834 0.56 +0.7 2,659,235 + SMc01834 0.68 -1.0 2,659,302 - SMc01834 0.80 +6.0 2,659,314 + SMc01834 0.82 +0.9 2,659,315 - SMc01834 0.82 +0.4 2,659,381 + +0.0 2,659,382 - -0.6 2,659,419 - +0.9 2,659,619 + -0.6 2,659,620 - -0.7 2,659,684 + -0.1 2,659,717 + +0.4 2,659,718 - -0.1 2,659,777 - SMc01995 0.20 -1.2 2,660,243 + SMc01836 0.54 -1.9 2,660,244 - SMc01836 0.55 -0.4 2,660,244 - SMc01836 0.55 +0.1 2,660,269 - SMc01836 0.63 +0.9
Or see this region's nucleotide sequence