Strain Fitness in Sinorhizobium meliloti 1021 around SMc01834

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01831 and SMc01832 overlap by 8 nucleotidesSMc01832 and SMc01833 are separated by 1 nucleotidesSMc01833 and SMc01834 are separated by 189 nucleotidesSMc01834 and SMc01995 are separated by 289 nucleotidesSMc01995 and SMc01836 overlap by 17 nucleotides SMc01831: SMc01831 - urease accessory protein, at 2,657,252 to 2,657,923 SMc01831 SMc01832: SMc01832 - urease accessory protein UreE, at 2,657,916 to 2,658,380 SMc01832 SMc01833: SMc01833 - hypothetical protein, at 2,658,382 to 2,658,678 SMc01833 SMc01834: SMc01834 - hypothetical protein, at 2,658,868 to 2,659,410 SMc01834 SMc01995: SMc01995 - hypothetical protein, at 2,659,700 to 2,660,086 SMc01995 SMc01836: SMc01836 - hypothetical protein, at 2,660,070 to 2,660,387 SMc01836 Position (kb) 2658 2659 2660Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 2657.882 kb on - strandat 2657.906 kb on - strandat 2657.930 kb on - strandat 2657.930 kb on - strandat 2658.148 kb on + strand, within SMc01832at 2658.496 kb on - strand, within SMc01833at 2658.566 kb on + strand, within SMc01833at 2658.567 kb on - strand, within SMc01833at 2658.659 kb on + strandat 2658.659 kb on + strandat 2658.660 kb on - strandat 2658.660 kb on - strandat 2658.660 kb on - strandat 2658.671 kb on + strandat 2658.671 kb on + strandat 2658.672 kb on - strandat 2658.766 kb on - strandat 2658.957 kb on - strand, within SMc01834at 2658.957 kb on - strand, within SMc01834at 2659.010 kb on + strand, within SMc01834at 2659.172 kb on + strand, within SMc01834at 2659.173 kb on - strand, within SMc01834at 2659.173 kb on - strand, within SMc01834at 2659.235 kb on + strand, within SMc01834at 2659.302 kb on - strand, within SMc01834at 2659.314 kb on + strand, within SMc01834at 2659.315 kb on - strand, within SMc01834at 2659.381 kb on + strandat 2659.382 kb on - strandat 2659.419 kb on - strandat 2659.619 kb on + strandat 2659.620 kb on - strandat 2659.684 kb on + strandat 2659.717 kb on + strandat 2659.718 kb on - strandat 2659.777 kb on - strand, within SMc01995at 2660.243 kb on + strand, within SMc01836at 2660.244 kb on - strand, within SMc01836at 2660.244 kb on - strand, within SMc01836at 2660.269 kb on - strand, within SMc01836

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,657,882 - +3.0
2,657,906 - -0.2
2,657,930 - -0.3
2,657,930 - -0.2
2,658,148 + SMc01832 0.50 +0.0
2,658,496 - SMc01833 0.38 +0.0
2,658,566 + SMc01833 0.62 +0.3
2,658,567 - SMc01833 0.62 +0.1
2,658,659 + +1.4
2,658,659 + +0.2
2,658,660 - -0.1
2,658,660 - +0.3
2,658,660 - -0.3
2,658,671 + -0.3
2,658,671 + -0.6
2,658,672 - +0.0
2,658,766 - -0.5
2,658,957 - SMc01834 0.16 -0.2
2,658,957 - SMc01834 0.16 -0.4
2,659,010 + SMc01834 0.26 -0.1
2,659,172 + SMc01834 0.56 +0.2
2,659,173 - SMc01834 0.56 +0.4
2,659,173 - SMc01834 0.56 +0.7
2,659,235 + SMc01834 0.68 -1.0
2,659,302 - SMc01834 0.80 +6.0
2,659,314 + SMc01834 0.82 +0.9
2,659,315 - SMc01834 0.82 +0.4
2,659,381 + +0.0
2,659,382 - -0.6
2,659,419 - +0.9
2,659,619 + -0.6
2,659,620 - -0.7
2,659,684 + -0.1
2,659,717 + +0.4
2,659,718 - -0.1
2,659,777 - SMc01995 0.20 -1.2
2,660,243 + SMc01836 0.54 -1.9
2,660,244 - SMc01836 0.55 -0.4
2,660,244 - SMc01836 0.55 +0.1
2,660,269 - SMc01836 0.63 +0.9

Or see this region's nucleotide sequence