Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01605 and SMc01606 are separated by 152 nucleotides SMc01606 and SMc01607 overlap by 4 nucleotides SMc01607 and SMc01608 are separated by 4 nucleotides
SMc01605: SMc01605 - periplasmic binding ABC transporter protein, at 2,394,145 to 2,395,248
SMc01605
SMc01606: SMc01606 - permease, at 2,395,401 to 2,396,207
SMc01606
SMc01607: SMc01607 - permease, at 2,396,204 to 2,396,992
SMc01607
SMc01608: SMc01608 - ABC transporter ATP-binding protein, at 2,396,997 to 2,398,058
SMc01608
Position (kb)
2395
2396
2397 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2394.499 kb on - strand, within SMc01605 at 2394.551 kb on - strand, within SMc01605 at 2394.556 kb on + strand, within SMc01605 at 2394.568 kb on + strand, within SMc01605 at 2394.712 kb on + strand, within SMc01605 at 2394.713 kb on - strand, within SMc01605 at 2394.874 kb on + strand, within SMc01605 at 2394.876 kb on + strand, within SMc01605 at 2394.961 kb on + strand, within SMc01605 at 2394.962 kb on - strand, within SMc01605 at 2395.021 kb on + strand, within SMc01605 at 2395.022 kb on - strand, within SMc01605 at 2395.022 kb on - strand, within SMc01605 at 2395.028 kb on - strand, within SMc01605 at 2395.063 kb on + strand, within SMc01605 at 2395.247 kb on - strand at 2395.275 kb on + strand at 2395.276 kb on - strand at 2395.325 kb on + strand at 2395.325 kb on + strand at 2395.440 kb on + strand at 2395.440 kb on + strand at 2395.441 kb on - strand at 2395.441 kb on - strand at 2395.770 kb on + strand, within SMc01606 at 2395.771 kb on - strand, within SMc01606 at 2395.818 kb on + strand, within SMc01606 at 2395.818 kb on + strand, within SMc01606 at 2395.818 kb on + strand, within SMc01606 at 2395.818 kb on + strand, within SMc01606 at 2395.819 kb on - strand, within SMc01606 at 2395.819 kb on - strand, within SMc01606 at 2395.819 kb on - strand, within SMc01606 at 2395.819 kb on - strand, within SMc01606 at 2395.824 kb on + strand, within SMc01606 at 2395.824 kb on + strand, within SMc01606 at 2395.824 kb on + strand, within SMc01606 at 2395.825 kb on - strand, within SMc01606 at 2396.070 kb on + strand, within SMc01606 at 2396.071 kb on - strand, within SMc01606 at 2396.100 kb on - strand, within SMc01606 at 2396.167 kb on - strand at 2396.255 kb on + strand at 2396.315 kb on + strand, within SMc01607 at 2396.315 kb on + strand, within SMc01607 at 2396.438 kb on + strand, within SMc01607 at 2396.439 kb on - strand, within SMc01607 at 2396.615 kb on + strand, within SMc01607 at 2396.637 kb on - strand, within SMc01607 at 2396.638 kb on + strand, within SMc01607 at 2396.638 kb on + strand, within SMc01607 at 2396.638 kb on + strand, within SMc01607 at 2396.638 kb on + strand, within SMc01607 at 2396.638 kb on + strand, within SMc01607 at 2396.639 kb on - strand, within SMc01607 at 2396.639 kb on - strand, within SMc01607 at 2396.643 kb on - strand, within SMc01607 at 2396.734 kb on - strand, within SMc01607 at 2396.819 kb on - strand, within SMc01607 at 2396.885 kb on + strand, within SMc01607 at 2396.885 kb on + strand, within SMc01607 at 2396.886 kb on - strand, within SMc01607 at 2397.020 kb on + strand at 2397.056 kb on + strand at 2397.057 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,394,499 - SMc01605 0.32 -1.4 2,394,551 - SMc01605 0.37 -2.3 2,394,556 + SMc01605 0.37 +0.2 2,394,568 + SMc01605 0.38 -1.6 2,394,712 + SMc01605 0.51 -0.5 2,394,713 - SMc01605 0.51 -1.3 2,394,874 + SMc01605 0.66 -0.1 2,394,876 + SMc01605 0.66 +0.9 2,394,961 + SMc01605 0.74 -0.0 2,394,962 - SMc01605 0.74 -1.9 2,395,021 + SMc01605 0.79 -0.4 2,395,022 - SMc01605 0.79 -1.0 2,395,022 - SMc01605 0.79 -0.5 2,395,028 - SMc01605 0.80 +1.6 2,395,063 + SMc01605 0.83 -0.9 2,395,247 - -0.9 2,395,275 + -0.6 2,395,276 - -1.1 2,395,325 + -1.4 2,395,325 + -0.6 2,395,440 + +0.1 2,395,440 + -0.7 2,395,441 - +0.4 2,395,441 - -1.2 2,395,770 + SMc01606 0.46 -1.8 2,395,771 - SMc01606 0.46 -0.7 2,395,818 + SMc01606 0.52 -0.7 2,395,818 + SMc01606 0.52 -0.6 2,395,818 + SMc01606 0.52 -0.5 2,395,818 + SMc01606 0.52 -3.7 2,395,819 - SMc01606 0.52 -1.1 2,395,819 - SMc01606 0.52 -0.7 2,395,819 - SMc01606 0.52 -0.7 2,395,819 - SMc01606 0.52 -0.4 2,395,824 + SMc01606 0.52 -0.1 2,395,824 + SMc01606 0.52 -1.4 2,395,824 + SMc01606 0.52 -0.3 2,395,825 - SMc01606 0.53 -1.2 2,396,070 + SMc01606 0.83 -0.1 2,396,071 - SMc01606 0.83 -0.7 2,396,100 - SMc01606 0.87 -0.5 2,396,167 - -1.2 2,396,255 + -1.7 2,396,315 + SMc01607 0.14 -0.5 2,396,315 + SMc01607 0.14 -0.7 2,396,438 + SMc01607 0.30 -0.2 2,396,439 - SMc01607 0.30 -0.0 2,396,615 + SMc01607 0.52 -0.4 2,396,637 - SMc01607 0.55 -0.1 2,396,638 + SMc01607 0.55 +0.0 2,396,638 + SMc01607 0.55 -2.0 2,396,638 + SMc01607 0.55 -0.2 2,396,638 + SMc01607 0.55 -0.5 2,396,638 + SMc01607 0.55 -0.7 2,396,639 - SMc01607 0.55 +0.2 2,396,639 - SMc01607 0.55 -1.9 2,396,643 - SMc01607 0.56 +0.8 2,396,734 - SMc01607 0.67 +0.2 2,396,819 - SMc01607 0.78 -1.1 2,396,885 + SMc01607 0.86 +1.3 2,396,885 + SMc01607 0.86 -0.9 2,396,886 - SMc01607 0.86 -1.7 2,397,020 + +0.4 2,397,056 + +0.2 2,397,057 - -0.9
Or see this region's nucleotide sequence