Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01561 and SMc01562 are separated by 368 nucleotides SMc01562 and SMc01563 are separated by 221 nucleotides SMc01563 and SMc01564 are separated by 432 nucleotides
SMc01561: SMc01561 - transmembrane protein, at 2,500,419 to 2,500,988
SMc01561
SMc01562: SMc01562 - hypothetical protein, at 2,501,357 to 2,501,647
SMc01562
SMc01563: SMc01563 - RNA polymerase sigma factor RpoD, at 2,501,869 to 2,503,923
SMc01563
SMc01564: SMc01564 - L-threonine 3-dehydrogenase, at 2,504,356 to 2,505,390
SMc01564
Position (kb)
2501
2502
2503
2504 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2501.018 kb on + strand at 2501.018 kb on + strand at 2501.019 kb on - strand at 2501.019 kb on - strand at 2501.025 kb on + strand at 2501.094 kb on + strand at 2501.094 kb on + strand at 2501.095 kb on - strand at 2501.095 kb on - strand at 2501.125 kb on + strand at 2501.126 kb on - strand at 2501.221 kb on - strand at 2501.221 kb on - strand at 2501.267 kb on + strand at 2501.267 kb on + strand at 2501.267 kb on + strand at 2501.267 kb on + strand at 2501.267 kb on + strand at 2501.267 kb on + strand at 2501.269 kb on + strand at 2501.417 kb on - strand, within SMc01562 at 2501.417 kb on - strand, within SMc01562 at 2501.447 kb on - strand, within SMc01562 at 2501.606 kb on - strand, within SMc01562 at 2501.637 kb on + strand at 2501.637 kb on + strand at 2501.637 kb on + strand at 2501.637 kb on + strand at 2501.637 kb on + strand at 2501.638 kb on - strand at 2501.638 kb on - strand at 2501.703 kb on + strand at 2501.703 kb on + strand at 2501.760 kb on + strand at 2501.806 kb on - strand at 2504.133 kb on - strand at 2504.133 kb on - strand at 2504.212 kb on - strand at 2504.253 kb on + strand at 2504.274 kb on + strand at 2504.274 kb on + strand at 2504.275 kb on - strand at 2504.357 kb on + strand at 2504.492 kb on + strand, within SMc01564 at 2504.492 kb on + strand, within SMc01564 at 2504.519 kb on + strand, within SMc01564 at 2504.519 kb on + strand, within SMc01564 at 2504.519 kb on + strand, within SMc01564 at 2504.520 kb on - strand, within SMc01564 at 2504.520 kb on - strand, within SMc01564 at 2504.520 kb on - strand, within SMc01564
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,501,018 + -0.1 2,501,018 + -0.1 2,501,019 - +0.4 2,501,019 - +0.3 2,501,025 + -1.8 2,501,094 + +0.5 2,501,094 + +0.5 2,501,095 - +0.5 2,501,095 - -1.4 2,501,125 + -1.1 2,501,126 - -2.5 2,501,221 - +0.7 2,501,221 - +0.4 2,501,267 + -0.6 2,501,267 + -0.7 2,501,267 + -0.3 2,501,267 + +0.4 2,501,267 + +0.3 2,501,267 + -0.2 2,501,269 + -0.1 2,501,417 - SMc01562 0.21 +0.1 2,501,417 - SMc01562 0.21 -0.6 2,501,447 - SMc01562 0.31 -0.4 2,501,606 - SMc01562 0.86 -0.7 2,501,637 + -0.1 2,501,637 + -0.2 2,501,637 + -0.6 2,501,637 + -0.1 2,501,637 + -0.2 2,501,638 - -0.8 2,501,638 - -0.2 2,501,703 + -0.4 2,501,703 + +0.7 2,501,760 + +0.4 2,501,806 - +0.1 2,504,133 - +0.8 2,504,133 - +1.4 2,504,212 - -0.7 2,504,253 + +0.1 2,504,274 + +0.9 2,504,274 + +1.2 2,504,275 - -1.1 2,504,357 + -0.3 2,504,492 + SMc01564 0.13 -0.7 2,504,492 + SMc01564 0.13 +1.8 2,504,519 + SMc01564 0.16 -0.5 2,504,519 + SMc01564 0.16 +1.1 2,504,519 + SMc01564 0.16 +1.4 2,504,520 - SMc01564 0.16 -0.7 2,504,520 - SMc01564 0.16 +0.6 2,504,520 - SMc01564 0.16 -0.2
Or see this region's nucleotide sequence