Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01365 and SMc01364 are separated by 2 nucleotides SMc01364 and SMc01363 are separated by 191 nucleotides
SMc01365: SMc01365 - exoribonuclease II protein, at 1,414,625 to 1,416,994
SMc01365
SMc01364: SMc01364 - DNA topoisomerase I, at 1,416,997 to 1,419,699
SMc01364
SMc01363: SMc01363 - hypothetical protein, at 1,419,891 to 1,421,042
SMc01363
Position (kb)
1416
1417
1418
1419
1420 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1416.086 kb on + strand, within SMc01365 at 1416.086 kb on + strand, within SMc01365 at 1416.190 kb on + strand, within SMc01365 at 1416.191 kb on - strand, within SMc01365 at 1416.474 kb on + strand, within SMc01365 at 1416.475 kb on - strand, within SMc01365 at 1416.664 kb on + strand, within SMc01365 at 1416.664 kb on + strand, within SMc01365 at 1416.774 kb on - strand at 1417.265 kb on + strand at 1417.266 kb on - strand at 1417.266 kb on - strand at 1417.294 kb on - strand, within SMc01364 at 1417.294 kb on - strand at 1419.781 kb on + strand at 1419.781 kb on + strand at 1419.782 kb on - strand at 1419.782 kb on - strand at 1419.785 kb on + strand at 1419.785 kb on + strand at 1419.785 kb on + strand at 1419.785 kb on + strand at 1419.785 kb on + strand at 1419.786 kb on - strand at 1419.786 kb on - strand at 1419.786 kb on - strand at 1419.786 kb on - strand at 1419.787 kb on + strand at 1419.788 kb on - strand at 1419.912 kb on + strand at 1419.912 kb on + strand at 1419.971 kb on + strand at 1419.971 kb on + strand at 1419.971 kb on + strand at 1419.972 kb on - strand at 1419.972 kb on - strand at 1419.998 kb on + strand at 1419.999 kb on - strand at 1419.999 kb on - strand at 1419.999 kb on - strand at 1420.294 kb on + strand, within SMc01363
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,416,086 + SMc01365 0.62 -0.2 1,416,086 + SMc01365 0.62 -0.3 1,416,190 + SMc01365 0.66 -0.7 1,416,191 - SMc01365 0.66 -0.2 1,416,474 + SMc01365 0.78 -0.6 1,416,475 - SMc01365 0.78 -0.3 1,416,664 + SMc01365 0.86 -0.0 1,416,664 + SMc01365 0.86 +0.4 1,416,774 - -0.4 1,417,265 + -1.1 1,417,266 - -0.8 1,417,266 - -0.0 1,417,294 - SMc01364 0.11 -0.8 1,417,294 - -0.2 1,419,781 + -0.8 1,419,781 + +1.2 1,419,782 - -0.6 1,419,782 - +1.5 1,419,785 + -0.0 1,419,785 + +0.4 1,419,785 + +0.5 1,419,785 + -0.5 1,419,785 + -0.4 1,419,786 - +0.8 1,419,786 - -1.3 1,419,786 - +1.1 1,419,786 - +0.8 1,419,787 + -0.2 1,419,788 - +3.1 1,419,912 + +0.6 1,419,912 + -0.1 1,419,971 + -0.8 1,419,971 + +0.4 1,419,971 + +0.0 1,419,972 - +0.4 1,419,972 - +0.5 1,419,998 + -0.2 1,419,999 - -0.3 1,419,999 - -0.1 1,419,999 - +0.4 1,420,294 + SMc01363 0.35 -0.6
Or see this region's nucleotide sequence