Strain Fitness in Sinorhizobium meliloti 1021 around SMc01333

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01334 and SMc01333 are separated by 201 nucleotidesSMc01333 and SMc01332 are separated by 499 nucleotides SMc01334: SMc01334 - penicillin-binding 1A transmembrane protein, at 1,446,764 to 1,449,217 SMc01334 SMc01333: SMc01333 - peptide chain release factor 2, at 1,449,419 to 1,450,447 SMc01333 SMc01332: SMc01332 - hypothetical protein, at 1,450,947 to 1,451,447 SMc01332 Position (kb) 1449 1450 1451Strain fitness (log2 ratio) -2 -1 0 1at 1449.251 kb on + strandat 1449.251 kb on + strandat 1450.445 kb on + strandat 1450.493 kb on - strandat 1450.753 kb on + strandat 1450.817 kb on + strandat 1450.828 kb on + strandat 1450.829 kb on - strandat 1450.829 kb on - strandat 1450.839 kb on + strandat 1450.839 kb on + strandat 1450.941 kb on + strandat 1451.100 kb on - strand, within SMc01332at 1451.110 kb on + strand, within SMc01332at 1451.111 kb on - strand, within SMc01332at 1451.237 kb on + strand, within SMc01332at 1451.239 kb on + strand, within SMc01332at 1451.239 kb on + strand, within SMc01332at 1451.239 kb on + strand, within SMc01332at 1451.394 kb on + strand, within SMc01332at 1451.394 kb on + strand, within SMc01332

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,449,251 + -0.8
1,449,251 + -0.3
1,450,445 + -0.2
1,450,493 - +1.7
1,450,753 + +0.7
1,450,817 + +0.4
1,450,828 + -2.0
1,450,829 - +0.5
1,450,829 - +0.4
1,450,839 + -0.4
1,450,839 + +0.8
1,450,941 + -1.1
1,451,100 - SMc01332 0.31 +0.3
1,451,110 + SMc01332 0.33 -0.1
1,451,111 - SMc01332 0.33 +0.5
1,451,237 + SMc01332 0.58 -0.4
1,451,239 + SMc01332 0.58 +0.5
1,451,239 + SMc01332 0.58 +0.9
1,451,239 + SMc01332 0.58 +0.7
1,451,394 + SMc01332 0.89 +1.2
1,451,394 + SMc01332 0.89 -0.3

Or see this region's nucleotide sequence