Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01206 and SMc01205 are separated by 448 nucleotides SMc01205 and SMc01204 are separated by 405 nucleotides
SMc01206: SMc01206 - queuine tRNA-ribosyltransferase, at 1,722,198 to 1,723,328
SMc01206
SMc01205: SMc01205 - amino-acid-binding periplasmic signal peptide protein, at 1,723,777 to 1,724,532
SMc01205
SMc01204: SMc01204 - transmembrane oxidoreductase, at 1,724,938 to 1,725,822
SMc01204
Position (kb)
1723
1724
1725 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1722.960 kb on - strand, within SMc01206 at 1723.216 kb on - strand at 1723.387 kb on + strand at 1723.387 kb on + strand at 1723.388 kb on - strand at 1723.388 kb on - strand at 1723.397 kb on - strand at 1723.397 kb on - strand at 1723.632 kb on + strand at 1723.689 kb on - strand at 1723.790 kb on + strand at 1723.791 kb on - strand at 1723.795 kb on - strand at 1723.995 kb on - strand, within SMc01205 at 1724.122 kb on + strand, within SMc01205 at 1724.125 kb on + strand, within SMc01205 at 1724.125 kb on + strand, within SMc01205 at 1724.126 kb on - strand, within SMc01205 at 1724.126 kb on - strand, within SMc01205 at 1724.134 kb on + strand, within SMc01205 at 1724.135 kb on - strand, within SMc01205 at 1724.140 kb on + strand, within SMc01205 at 1724.190 kb on + strand, within SMc01205 at 1724.190 kb on + strand, within SMc01205 at 1724.191 kb on - strand, within SMc01205 at 1724.281 kb on + strand, within SMc01205 at 1724.281 kb on + strand, within SMc01205 at 1724.282 kb on - strand, within SMc01205 at 1724.446 kb on + strand, within SMc01205 at 1724.446 kb on + strand, within SMc01205 at 1724.446 kb on + strand, within SMc01205 at 1724.504 kb on + strand at 1724.583 kb on + strand at 1724.584 kb on - strand at 1724.584 kb on - strand at 1724.598 kb on + strand at 1724.604 kb on + strand at 1725.176 kb on + strand, within SMc01204 at 1725.351 kb on - strand, within SMc01204 at 1725.351 kb on - strand, within SMc01204 at 1725.353 kb on + strand, within SMc01204 at 1725.353 kb on + strand, within SMc01204 at 1725.354 kb on - strand, within SMc01204 at 1725.354 kb on - strand, within SMc01204 at 1725.354 kb on - strand, within SMc01204 at 1725.365 kb on + strand, within SMc01204 at 1725.365 kb on + strand, within SMc01204 at 1725.365 kb on + strand, within SMc01204 at 1725.365 kb on + strand, within SMc01204 at 1725.365 kb on + strand, within SMc01204 at 1725.365 kb on + strand, within SMc01204 at 1725.366 kb on - strand, within SMc01204 at 1725.366 kb on - strand, within SMc01204
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,722,960 - SMc01206 0.67 +4.1 1,723,216 - +4.7 1,723,387 + -0.1 1,723,387 + -0.4 1,723,388 - -0.1 1,723,388 - +0.2 1,723,397 - -0.5 1,723,397 - -0.2 1,723,632 + -1.5 1,723,689 - +0.1 1,723,790 + +0.3 1,723,791 - -0.1 1,723,795 - -1.0 1,723,995 - SMc01205 0.29 +1.1 1,724,122 + SMc01205 0.46 +0.5 1,724,125 + SMc01205 0.46 +0.4 1,724,125 + SMc01205 0.46 -0.5 1,724,126 - SMc01205 0.46 +0.4 1,724,126 - SMc01205 0.46 +0.0 1,724,134 + SMc01205 0.47 +0.5 1,724,135 - SMc01205 0.47 +0.1 1,724,140 + SMc01205 0.48 +0.6 1,724,190 + SMc01205 0.55 +0.2 1,724,190 + SMc01205 0.55 -0.2 1,724,191 - SMc01205 0.55 +0.6 1,724,281 + SMc01205 0.67 +0.4 1,724,281 + SMc01205 0.67 -1.2 1,724,282 - SMc01205 0.67 -0.9 1,724,446 + SMc01205 0.88 -0.2 1,724,446 + SMc01205 0.88 -0.0 1,724,446 + SMc01205 0.88 +0.6 1,724,504 + -0.2 1,724,583 + +0.2 1,724,584 - +0.4 1,724,584 - -0.4 1,724,598 + -0.1 1,724,604 + +0.9 1,725,176 + SMc01204 0.27 -0.5 1,725,351 - SMc01204 0.47 -0.6 1,725,351 - SMc01204 0.47 +0.0 1,725,353 + SMc01204 0.47 -0.6 1,725,353 + SMc01204 0.47 -1.3 1,725,354 - SMc01204 0.47 -0.0 1,725,354 - SMc01204 0.47 -2.3 1,725,354 - SMc01204 0.47 -2.1 1,725,365 + SMc01204 0.48 -1.2 1,725,365 + SMc01204 0.48 -1.5 1,725,365 + SMc01204 0.48 -0.4 1,725,365 + SMc01204 0.48 -0.9 1,725,365 + SMc01204 0.48 -0.6 1,725,365 + SMc01204 0.48 +0.2 1,725,366 - SMc01204 0.48 -3.4 1,725,366 - SMc01204 0.48 +0.6
Or see this region's nucleotide sequence