Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01167 and SMc01151 are separated by 123 nucleotides SMc01151 and SMc01150 overlap by 4 nucleotides
SMc01167: SMc01167 - chromosomal replication initiation protein, at 399,330 to 400,853
SMc01167
SMc01151: SMc01151 - hypothetical protein, at 400,977 to 401,351
SMc01151
SMc01150: SMc01150 - hypothetical protein, at 401,348 to 402,619
SMc01150
Position (kb) 400
401
402 Strain fitness (log2 ratio) -1
0
1
2 at 400.851 kb on + strand at 400.873 kb on + strand at 400.873 kb on + strand at 400.939 kb on + strand at 400.983 kb on + strand at 401.082 kb on + strand, within SMc01151 at 401.082 kb on + strand, within SMc01151 at 401.082 kb on + strand, within SMc01151 at 401.083 kb on - strand, within SMc01151 at 401.083 kb on - strand, within SMc01151 at 401.083 kb on - strand, within SMc01151 at 401.220 kb on + strand, within SMc01151 at 401.220 kb on + strand, within SMc01151 at 401.221 kb on - strand, within SMc01151 at 401.326 kb on - strand at 401.326 kb on - strand at 401.420 kb on + strand at 401.467 kb on + strand at 401.752 kb on - strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.921 kb on + strand, within SMc01150 at 401.922 kb on - strand, within SMc01150 at 401.922 kb on - strand, within SMc01150 at 401.922 kb on - strand, within SMc01150 at 401.922 kb on - strand, within SMc01150 at 401.942 kb on + strand, within SMc01150 at 402.228 kb on + strand, within SMc01150 at 402.306 kb on - strand, within SMc01150
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 400,851 + +2.2 400,873 + +0.7 400,873 + +1.6 400,939 + +0.5 400,983 + -0.3 401,082 + SMc01151 0.28 +0.6 401,082 + SMc01151 0.28 +0.4 401,082 + SMc01151 0.28 -0.3 401,083 - SMc01151 0.28 -0.4 401,083 - SMc01151 0.28 -0.7 401,083 - SMc01151 0.28 +1.4 401,220 + SMc01151 0.65 +0.7 401,220 + SMc01151 0.65 +0.7 401,221 - SMc01151 0.65 +1.8 401,326 - -0.8 401,326 - -0.0 401,420 + -0.3 401,467 + -1.4 401,752 - SMc01150 0.32 +0.0 401,921 + SMc01150 0.45 -1.6 401,921 + SMc01150 0.45 -0.7 401,921 + SMc01150 0.45 -0.5 401,921 + SMc01150 0.45 -0.7 401,921 + SMc01150 0.45 +0.1 401,921 + SMc01150 0.45 +0.3 401,921 + SMc01150 0.45 -0.5 401,922 - SMc01150 0.45 -0.7 401,922 - SMc01150 0.45 -0.7 401,922 - SMc01150 0.45 +1.2 401,922 - SMc01150 0.45 -1.3 401,942 + SMc01150 0.47 +0.3 402,228 + SMc01150 0.69 -0.4 402,306 - SMc01150 0.75 +1.4
Or see this region's nucleotide sequence