Strain Fitness in Sinorhizobium meliloti 1021 around SMc01099

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01100 and SMc01099 overlap by 1 nucleotidesSMc01099 and SMc01098 are separated by 137 nucleotidesSMc01098 and SMc01394 overlap by 134 nucleotides SMc01100: SMc01100 - methionyl-tRNA formyltransferase, at 456,143 to 457,078 SMc01100 SMc01099: SMc01099 - tRNA pseudouridine synthase A, at 457,078 to 457,821 SMc01099 SMc01098: SMc01098 - hypothetical protein, at 457,959 to 458,564 SMc01098 SMc01394: SMc01394 - hypothetical protein, at 458,431 to 458,886 SMc01394 Position (kb) 457 458Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 457.120 kb on + strandat 457.414 kb on + strand, within SMc01099at 457.414 kb on + strand, within SMc01099at 457.415 kb on - strand, within SMc01099at 457.415 kb on - strand, within SMc01099at 457.799 kb on - strandat 457.816 kb on + strandat 457.816 kb on + strandat 457.956 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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457,120 + +4.9
457,414 + SMc01099 0.45 +5.5
457,414 + SMc01099 0.45 +4.7
457,415 - SMc01099 0.45 +4.2
457,415 - SMc01099 0.45 +6.1
457,799 - +5.2
457,816 + -0.5
457,816 + -0.2
457,956 - -0.5

Or see this region's nucleotide sequence