Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00974 and SMc00973 overlap by 4 nucleotides SMc00973 and SMc00972 are separated by 51 nucleotides SMc00972 and SMc00971 are separated by 196 nucleotides
SMc00974: SMc00974 - RNA methyltransferase, at 965,799 to 967,046
SMc00974
SMc00973: SMc00973 - hypothetical protein, at 967,043 to 967,798
SMc00973
SMc00972: SMc00972 - 1-deoxy-D-xylulose-5-phosphate synthase, at 967,850 to 969,787
SMc00972
SMc00971: SMc00971 - hypothetical protein, at 969,984 to 970,907
SMc00971
Position (kb) 967
968
969
970 Strain fitness (log2 ratio) -2
-1
0
1
2 at 967.400 kb on - strand, within SMc00973 at 967.606 kb on - strand, within SMc00973 at 967.606 kb on - strand, within SMc00973 at 967.787 kb on - strand at 967.787 kb on - strand at 969.855 kb on - strand at 969.886 kb on - strand at 970.002 kb on + strand at 970.002 kb on + strand at 970.110 kb on - strand, within SMc00971 at 970.110 kb on - strand, within SMc00971 at 970.203 kb on + strand, within SMc00971 at 970.203 kb on + strand, within SMc00971 at 970.204 kb on - strand, within SMc00971 at 970.264 kb on + strand, within SMc00971 at 970.264 kb on + strand, within SMc00971 at 970.265 kb on - strand, within SMc00971 at 970.333 kb on + strand, within SMc00971 at 970.333 kb on + strand, within SMc00971 at 970.333 kb on + strand, within SMc00971 at 970.333 kb on + strand, within SMc00971 at 970.334 kb on - strand, within SMc00971 at 970.340 kb on + strand, within SMc00971 at 970.340 kb on + strand, within SMc00971 at 970.340 kb on + strand, within SMc00971 at 970.341 kb on - strand, within SMc00971 at 970.346 kb on + strand, within SMc00971 at 970.346 kb on + strand, within SMc00971 at 970.347 kb on - strand, within SMc00971 at 970.433 kb on + strand, within SMc00971 at 970.434 kb on - strand, within SMc00971 at 970.660 kb on + strand, within SMc00971 at 970.661 kb on - strand, within SMc00971 at 970.661 kb on - strand, within SMc00971
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 967,400 - SMc00973 0.47 +2.1 967,606 - SMc00973 0.74 +0.8 967,606 - SMc00973 0.74 +0.7 967,787 - +0.3 967,787 - -0.0 969,855 - +0.4 969,886 - -0.0 970,002 + +0.1 970,002 + -0.5 970,110 - SMc00971 0.14 +0.5 970,110 - SMc00971 0.14 -1.1 970,203 + SMc00971 0.24 -0.2 970,203 + SMc00971 0.24 -0.2 970,204 - SMc00971 0.24 +0.8 970,264 + SMc00971 0.30 -2.5 970,264 + SMc00971 0.30 -0.5 970,265 - SMc00971 0.30 +1.0 970,333 + SMc00971 0.38 -0.2 970,333 + SMc00971 0.38 -0.4 970,333 + SMc00971 0.38 -0.8 970,333 + SMc00971 0.38 -0.2 970,334 - SMc00971 0.38 +0.1 970,340 + SMc00971 0.39 -0.9 970,340 + SMc00971 0.39 -0.2 970,340 + SMc00971 0.39 -0.9 970,341 - SMc00971 0.39 +0.7 970,346 + SMc00971 0.39 -0.2 970,346 + SMc00971 0.39 +2.4 970,347 - SMc00971 0.39 +0.3 970,433 + SMc00971 0.49 -0.3 970,434 - SMc00971 0.49 +0.8 970,660 + SMc00971 0.73 +0.1 970,661 - SMc00971 0.73 -0.6 970,661 - SMc00971 0.73 +0.4
Or see this region's nucleotide sequence