Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00874 and SMc00873 are separated by 49 nucleotides SMc00873 and SMc00928 are separated by 290 nucleotides
SMc00874: SMc00874 - magnesium/cobalt transporter CorA, at 911,877 to 912,857
SMc00874
SMc00873: SMc00873 - KUP system potassium uptake transmembrane protein, at 912,907 to 914,775
SMc00873
SMc00928: SMc00928 - signal peptide protein, at 915,066 to 916,223
SMc00928
Position (kb) 912
913
914
915 Strain fitness (log2 ratio) -2
-1
0
1 at 911.966 kb on - strand at 911.966 kb on - strand at 912.075 kb on + strand, within SMc00874 at 912.077 kb on + strand, within SMc00874 at 912.195 kb on + strand, within SMc00874 at 912.234 kb on - strand, within SMc00874 at 912.234 kb on - strand, within SMc00874 at 912.234 kb on - strand, within SMc00874 at 912.558 kb on - strand, within SMc00874 at 912.593 kb on + strand, within SMc00874 at 912.593 kb on + strand, within SMc00874 at 912.593 kb on + strand, within SMc00874 at 912.594 kb on - strand, within SMc00874 at 912.614 kb on + strand, within SMc00874 at 912.615 kb on - strand, within SMc00874 at 912.732 kb on + strand, within SMc00874 at 912.855 kb on + strand at 912.856 kb on - strand at 912.988 kb on + strand at 912.989 kb on - strand at 913.098 kb on - strand, within SMc00873 at 913.103 kb on - strand, within SMc00873 at 913.103 kb on - strand, within SMc00873 at 913.109 kb on + strand, within SMc00873 at 913.109 kb on + strand, within SMc00873 at 913.322 kb on - strand, within SMc00873 at 913.322 kb on - strand, within SMc00873 at 913.413 kb on + strand, within SMc00873 at 913.414 kb on - strand, within SMc00873 at 913.458 kb on + strand, within SMc00873 at 913.459 kb on - strand, within SMc00873 at 913.459 kb on - strand, within SMc00873 at 913.501 kb on + strand, within SMc00873 at 913.502 kb on - strand, within SMc00873 at 913.531 kb on + strand, within SMc00873 at 913.532 kb on - strand, within SMc00873 at 913.532 kb on - strand, within SMc00873 at 913.547 kb on + strand, within SMc00873 at 913.592 kb on - strand, within SMc00873 at 913.672 kb on + strand, within SMc00873 at 913.672 kb on + strand, within SMc00873 at 913.812 kb on - strand, within SMc00873 at 913.882 kb on - strand, within SMc00873 at 913.909 kb on + strand, within SMc00873 at 913.909 kb on + strand, within SMc00873 at 913.910 kb on - strand, within SMc00873 at 914.059 kb on - strand, within SMc00873 at 914.168 kb on - strand, within SMc00873 at 914.339 kb on + strand, within SMc00873 at 914.615 kb on - strand at 914.615 kb on - strand at 914.825 kb on - strand at 914.964 kb on + strand at 914.964 kb on + strand at 914.965 kb on - strand at 915.054 kb on - strand at 915.220 kb on - strand, within SMc00928 at 915.670 kb on - strand, within SMc00928
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 911,966 - -0.5 911,966 - +0.9 912,075 + SMc00874 0.20 +0.4 912,077 + SMc00874 0.20 -0.8 912,195 + SMc00874 0.32 +0.1 912,234 - SMc00874 0.36 +0.1 912,234 - SMc00874 0.36 +0.1 912,234 - SMc00874 0.36 -0.3 912,558 - SMc00874 0.69 +1.3 912,593 + SMc00874 0.73 +0.0 912,593 + SMc00874 0.73 +0.3 912,593 + SMc00874 0.73 +0.4 912,594 - SMc00874 0.73 +0.2 912,614 + SMc00874 0.75 -0.1 912,615 - SMc00874 0.75 -0.2 912,732 + SMc00874 0.87 -0.6 912,855 + +0.8 912,856 - +0.8 912,988 + +0.1 912,989 - -0.5 913,098 - SMc00873 0.10 +0.9 913,103 - SMc00873 0.10 +0.0 913,103 - SMc00873 0.10 +0.4 913,109 + SMc00873 0.11 -0.3 913,109 + SMc00873 0.11 -0.7 913,322 - SMc00873 0.22 +0.3 913,322 - SMc00873 0.22 -0.8 913,413 + SMc00873 0.27 -0.6 913,414 - SMc00873 0.27 +0.8 913,458 + SMc00873 0.29 +0.3 913,459 - SMc00873 0.30 +0.3 913,459 - SMc00873 0.30 +0.0 913,501 + SMc00873 0.32 +0.8 913,502 - SMc00873 0.32 +1.4 913,531 + SMc00873 0.33 +0.7 913,532 - SMc00873 0.33 -0.6 913,532 - SMc00873 0.33 -0.7 913,547 + SMc00873 0.34 +0.4 913,592 - SMc00873 0.37 -0.5 913,672 + SMc00873 0.41 -0.9 913,672 + SMc00873 0.41 +0.3 913,812 - SMc00873 0.48 +0.2 913,882 - SMc00873 0.52 +0.0 913,909 + SMc00873 0.54 +0.2 913,909 + SMc00873 0.54 +0.4 913,910 - SMc00873 0.54 -0.1 914,059 - SMc00873 0.62 +1.0 914,168 - SMc00873 0.67 -1.0 914,339 + SMc00873 0.77 +0.4 914,615 - -0.4 914,615 - -0.7 914,825 - +0.5 914,964 + -2.1 914,964 + -1.5 914,965 - -0.7 915,054 - +0.4 915,220 - SMc00928 0.13 -1.5 915,670 - SMc00928 0.52 -1.0
Or see this region's nucleotide sequence