Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00790 and SMc00791 are separated by 64 nucleotides SMc00791 and SMc00792 are separated by 152 nucleotides SMc00792 and SMc00793 are separated by 101 nucleotides SMc00793 and SMc00794 are separated by 26 nucleotides
SMc00790: SMc00790 - peptide ABC transporter ATP-binding protein, at 811,962 to 812,789
SMc00790
SMc00791: SMc00791 - hypothetical protein, at 812,854 to 813,198
SMc00791
SMc00792: SMc00792 - hypothetical protein, at 813,351 to 813,521
SMc00792
SMc00793: SMc00793 - permease, at 813,623 to 814,753
SMc00793
SMc00794: SMc00794 - two-component response regulator, at 814,780 to 815,577
SMc00794
Position (kb) 813
814
815 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 812.632 kb on + strand, within SMc00790 at 812.632 kb on + strand, within SMc00790 at 812.633 kb on - strand, within SMc00790 at 812.643 kb on + strand, within SMc00790 at 812.643 kb on + strand, within SMc00790 at 812.644 kb on - strand, within SMc00790 at 812.644 kb on - strand, within SMc00790 at 812.644 kb on - strand, within SMc00790 at 812.664 kb on + strand, within SMc00790 at 812.665 kb on - strand, within SMc00790 at 812.707 kb on - strand at 812.708 kb on + strand at 812.708 kb on + strand at 812.708 kb on + strand at 812.709 kb on - strand at 812.709 kb on - strand at 812.797 kb on + strand at 812.797 kb on + strand at 812.798 kb on - strand at 812.798 kb on - strand at 812.798 kb on - strand at 812.798 kb on - strand at 812.798 kb on - strand at 812.801 kb on + strand at 812.801 kb on + strand at 812.838 kb on + strand at 812.839 kb on - strand at 812.905 kb on + strand, within SMc00791 at 812.905 kb on + strand, within SMc00791 at 813.164 kb on - strand at 813.218 kb on + strand at 813.219 kb on - strand at 813.219 kb on - strand at 813.220 kb on + strand at 813.220 kb on + strand at 813.220 kb on + strand at 813.220 kb on + strand at 813.220 kb on + strand at 813.221 kb on - strand at 813.221 kb on - strand at 813.221 kb on - strand at 813.221 kb on - strand at 813.278 kb on - strand at 813.321 kb on - strand at 813.357 kb on + strand at 813.401 kb on - strand, within SMc00792 at 813.401 kb on - strand, within SMc00792 at 813.401 kb on - strand, within SMc00792 at 813.445 kb on - strand, within SMc00792 at 813.445 kb on - strand, within SMc00792 at 813.445 kb on - strand, within SMc00792 at 813.614 kb on + strand at 813.614 kb on + strand at 813.614 kb on + strand at 813.614 kb on + strand at 813.614 kb on + strand at 813.615 kb on - strand at 813.794 kb on + strand, within SMc00793 at 813.794 kb on + strand, within SMc00793 at 813.795 kb on - strand at 813.797 kb on - strand, within SMc00793 at 813.797 kb on - strand, within SMc00793 at 813.797 kb on - strand, within SMc00793 at 813.922 kb on - strand, within SMc00793 at 814.026 kb on + strand, within SMc00793 at 814.035 kb on - strand, within SMc00793 at 814.063 kb on - strand, within SMc00793 at 814.063 kb on - strand, within SMc00793 at 814.197 kb on + strand, within SMc00793 at 814.198 kb on - strand, within SMc00793 at 814.310 kb on - strand, within SMc00793 at 814.340 kb on + strand, within SMc00793 at 814.341 kb on - strand, within SMc00793 at 814.704 kb on + strand at 814.716 kb on + strand at 814.716 kb on + strand at 814.717 kb on - strand at 814.777 kb on + strand at 814.778 kb on - strand at 814.781 kb on + strand at 814.782 kb on - strand at 814.868 kb on - strand, within SMc00794 at 815.039 kb on + strand, within SMc00794 at 815.040 kb on - strand, within SMc00794 at 815.046 kb on + strand, within SMc00794 at 815.046 kb on + strand, within SMc00794 at 815.486 kb on + strand, within SMc00794 at 815.486 kb on + strand, within SMc00794 at 815.486 kb on + strand, within SMc00794 at 815.486 kb on + strand, within SMc00794 at 815.486 kb on + strand, within SMc00794 at 815.486 kb on + strand, within SMc00794 at 815.486 kb on + strand at 815.487 kb on - strand, within SMc00794 at 815.487 kb on - strand, within SMc00794 at 815.487 kb on - strand, within SMc00794 at 815.487 kb on - strand, within SMc00794 at 815.487 kb on - strand, within SMc00794 at 815.487 kb on - strand, within SMc00794 at 815.487 kb on - strand, within SMc00794 at 815.528 kb on + strand at 815.541 kb on - strand at 815.579 kb on + strand at 815.590 kb on - strand at 815.594 kb on + strand at 815.595 kb on - strand at 815.598 kb on - strand at 815.598 kb on - strand at 815.598 kb on - strand at 815.598 kb on - strand at 815.603 kb on + strand at 815.603 kb on + strand at 815.603 kb on + strand at 815.603 kb on + strand at 815.603 kb on + strand at 815.604 kb on - strand at 815.604 kb on - strand at 815.637 kb on + strand at 815.637 kb on + strand at 815.659 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 812,632 + SMc00790 0.81 +1.5 812,632 + SMc00790 0.81 +1.1 812,633 - SMc00790 0.81 +1.2 812,643 + SMc00790 0.82 +0.7 812,643 + SMc00790 0.82 -0.6 812,644 - SMc00790 0.82 +1.1 812,644 - SMc00790 0.82 +0.8 812,644 - SMc00790 0.82 +0.7 812,664 + SMc00790 0.85 +1.0 812,665 - SMc00790 0.85 +0.1 812,707 - +0.9 812,708 + +0.9 812,708 + +0.7 812,708 + +0.5 812,709 - +0.1 812,709 - +2.4 812,797 + -0.6 812,797 + +0.2 812,798 - +1.0 812,798 - +0.7 812,798 - +0.3 812,798 - +1.5 812,798 - +1.0 812,801 + +0.3 812,801 + +0.9 812,838 + -0.2 812,839 - +0.9 812,905 + SMc00791 0.15 -0.7 812,905 + SMc00791 0.15 +1.7 813,164 - +0.1 813,218 + +0.5 813,219 - -0.3 813,219 - +0.4 813,220 + -0.3 813,220 + +0.6 813,220 + -1.7 813,220 + -0.8 813,220 + +0.1 813,221 - +1.0 813,221 - -0.7 813,221 - +1.0 813,221 - +1.8 813,278 - +0.1 813,321 - -0.1 813,357 + -2.4 813,401 - SMc00792 0.29 -0.0 813,401 - SMc00792 0.29 -1.6 813,401 - SMc00792 0.29 +0.4 813,445 - SMc00792 0.55 -0.2 813,445 - SMc00792 0.55 -1.2 813,445 - SMc00792 0.55 +0.6 813,614 + -0.9 813,614 + -1.2 813,614 + +0.2 813,614 + +1.3 813,614 + -0.0 813,615 - -0.4 813,794 + SMc00793 0.15 -1.4 813,794 + SMc00793 0.15 +0.7 813,795 - +0.3 813,797 - SMc00793 0.15 -0.2 813,797 - SMc00793 0.15 -1.9 813,797 - SMc00793 0.15 -0.8 813,922 - SMc00793 0.26 -1.0 814,026 + SMc00793 0.36 -1.5 814,035 - SMc00793 0.36 -1.6 814,063 - SMc00793 0.39 -0.3 814,063 - SMc00793 0.39 -0.5 814,197 + SMc00793 0.51 +0.0 814,198 - SMc00793 0.51 -0.6 814,310 - SMc00793 0.61 -0.0 814,340 + SMc00793 0.63 +0.1 814,341 - SMc00793 0.63 -0.8 814,704 + -0.2 814,716 + +0.3 814,716 + +0.7 814,717 - -0.4 814,777 + +0.7 814,778 - -0.2 814,781 + +1.0 814,782 - -0.1 814,868 - SMc00794 0.11 +0.1 815,039 + SMc00794 0.32 +0.7 815,040 - SMc00794 0.33 +0.2 815,046 + SMc00794 0.33 +1.1 815,046 + SMc00794 0.33 +0.8 815,486 + SMc00794 0.88 +0.5 815,486 + SMc00794 0.88 +0.3 815,486 + SMc00794 0.88 +2.5 815,486 + SMc00794 0.88 +0.1 815,486 + SMc00794 0.88 +0.4 815,486 + SMc00794 0.88 -0.4 815,486 + +0.5 815,487 - SMc00794 0.89 -0.6 815,487 - SMc00794 0.89 +0.5 815,487 - SMc00794 0.89 +0.2 815,487 - SMc00794 0.89 +0.4 815,487 - SMc00794 0.89 +0.9 815,487 - SMc00794 0.89 -0.1 815,487 - SMc00794 0.89 -0.3 815,528 + +0.2 815,541 - -0.1 815,579 + +0.4 815,590 - -0.7 815,594 + -0.1 815,595 - -2.1 815,598 - -4.0 815,598 - -2.0 815,598 - +0.8 815,598 - -0.8 815,603 + -0.2 815,603 + +0.1 815,603 + +1.0 815,603 + +0.2 815,603 + -0.2 815,604 - -0.9 815,604 - -1.9 815,637 + +1.0 815,637 + +0.4 815,659 + +0.2
Or see this region's nucleotide sequence