Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00576 and SMc00577 are separated by 3 nucleotides SMc00577 and SMc00578 are separated by 62 nucleotides SMc00578 and SMc00579 are separated by 221 nucleotides
SMc00576: SMc00576 - hypothetical protein, at 1,246,291 to 1,247,178
SMc00576
SMc00577: SMc00577 - guanylate kinase, at 1,247,182 to 1,247,841
SMc00577
SMc00578: SMc00578 - hypothetical protein, at 1,247,904 to 1,248,032
SMc00578
SMc00579: SMc00579 - dimethyladenosine transferase, at 1,248,254 to 1,249,078
SMc00579
Position (kb)
1247
1248 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1246.203 kb on - strand at 1246.203 kb on - strand at 1246.263 kb on + strand at 1246.425 kb on + strand, within SMc00576 at 1246.426 kb on - strand, within SMc00576 at 1246.426 kb on - strand, within SMc00576 at 1246.611 kb on + strand, within SMc00576 at 1246.695 kb on - strand, within SMc00576 at 1246.775 kb on + strand, within SMc00576 at 1246.775 kb on + strand, within SMc00576 at 1246.776 kb on - strand, within SMc00576 at 1247.076 kb on + strand at 1248.057 kb on - strand at 1248.111 kb on - strand at 1248.111 kb on - strand at 1248.574 kb on - strand, within SMc00579 at 1248.574 kb on - strand, within SMc00579 at 1248.574 kb on - strand, within SMc00579
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,246,203 - +1.6 1,246,203 - +1.8 1,246,263 + -0.3 1,246,425 + SMc00576 0.15 -1.1 1,246,426 - SMc00576 0.15 +2.6 1,246,426 - SMc00576 0.15 +0.9 1,246,611 + SMc00576 0.36 -1.2 1,246,695 - SMc00576 0.45 +3.5 1,246,775 + SMc00576 0.55 +0.1 1,246,775 + SMc00576 0.55 -0.8 1,246,776 - SMc00576 0.55 +3.3 1,247,076 + +0.9 1,248,057 - -1.5 1,248,111 - -1.4 1,248,111 - +0.4 1,248,574 - SMc00579 0.39 -2.5 1,248,574 - SMc00579 0.39 -0.6 1,248,574 - SMc00579 0.39 -1.4
Or see this region's nucleotide sequence