Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00412 and SMc00413 are separated by 7 nucleotides SMc00413 and SMc00414 are separated by 14 nucleotides SMc00414 and SMc00415 are separated by 203 nucleotides
SMc00412: SMc00412 - orotidine 5'-phosphate decarboxylase, at 362,070 to 362,774
SMc00412
SMc00413: SMc00413 - hypothetical protein, at 362,782 to 363,363
SMc00413
SMc00414: SMc00414 - hypothetical protein, at 363,378 to 363,980
SMc00414
SMc00415: SMc00415 - DNA polymerase III subunit beta, at 364,184 to 365,302
SMc00415
Position (kb) 363
364 Strain fitness (log2 ratio) -1
0
1
2
3 at 362.380 kb on + strand, within SMc00412 at 362.381 kb on - strand, within SMc00412 at 362.386 kb on + strand, within SMc00412 at 362.497 kb on + strand, within SMc00412 at 362.497 kb on + strand, within SMc00412 at 362.660 kb on - strand, within SMc00412 at 362.670 kb on - strand, within SMc00412 at 362.671 kb on + strand, within SMc00412 at 362.672 kb on - strand, within SMc00412 at 362.672 kb on - strand, within SMc00412 at 362.918 kb on - strand, within SMc00413 at 363.224 kb on - strand, within SMc00413 at 363.350 kb on + strand at 363.350 kb on + strand at 363.350 kb on + strand at 363.350 kb on + strand at 363.350 kb on + strand at 363.350 kb on + strand at 363.351 kb on - strand at 363.351 kb on - strand at 363.351 kb on - strand at 363.394 kb on + strand at 363.493 kb on + strand, within SMc00414 at 363.494 kb on - strand, within SMc00414 at 363.546 kb on + strand, within SMc00414 at 363.547 kb on - strand, within SMc00414 at 363.547 kb on - strand, within SMc00414 at 363.706 kb on + strand, within SMc00414 at 363.722 kb on - strand, within SMc00414 at 363.750 kb on + strand, within SMc00414 at 363.750 kb on + strand, within SMc00414 at 363.750 kb on + strand, within SMc00414 at 363.751 kb on - strand, within SMc00414 at 363.751 kb on - strand, within SMc00414 at 363.834 kb on + strand, within SMc00414 at 363.834 kb on + strand, within SMc00414 at 363.897 kb on - strand, within SMc00414 at 364.053 kb on + strand at 364.129 kb on + strand at 364.130 kb on - strand at 364.133 kb on + strand at 364.133 kb on + strand at 364.186 kb on - strand at 364.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 362,380 + SMc00412 0.44 +1.3 362,381 - SMc00412 0.44 -0.4 362,386 + SMc00412 0.45 +0.6 362,497 + SMc00412 0.61 +0.7 362,497 + SMc00412 0.61 +0.5 362,660 - SMc00412 0.84 +0.6 362,670 - SMc00412 0.85 +1.3 362,671 + SMc00412 0.85 +0.9 362,672 - SMc00412 0.85 -0.5 362,672 - SMc00412 0.85 -0.1 362,918 - SMc00413 0.23 +0.0 363,224 - SMc00413 0.76 -0.2 363,350 + -0.3 363,350 + +0.1 363,350 + -0.2 363,350 + -0.1 363,350 + +0.2 363,350 + +0.2 363,351 - -1.0 363,351 - +0.0 363,351 - -0.0 363,394 + +1.7 363,493 + SMc00414 0.19 +1.5 363,494 - SMc00414 0.19 +0.7 363,546 + SMc00414 0.28 +2.7 363,547 - SMc00414 0.28 +1.3 363,547 - SMc00414 0.28 +1.8 363,706 + SMc00414 0.54 +1.8 363,722 - SMc00414 0.57 +1.5 363,750 + SMc00414 0.62 +0.8 363,750 + SMc00414 0.62 +1.6 363,750 + SMc00414 0.62 +1.2 363,751 - SMc00414 0.62 +1.6 363,751 - SMc00414 0.62 +1.5 363,834 + SMc00414 0.76 +3.0 363,834 + SMc00414 0.76 +1.6 363,897 - SMc00414 0.86 +2.0 364,053 + +0.8 364,129 + +0.9 364,130 - -0.4 364,133 + +0.4 364,133 + +0.5 364,186 - +0.3 364,186 - -0.9
Or see this region's nucleotide sequence