Strain Fitness in Sinorhizobium meliloti 1021 around SMc00137

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00138 and SMc00137 are separated by 171 nucleotidesSMc00137 and SMc00136 are separated by 140 nucleotidesSMc00136 and SMc00135 are separated by 119 nucleotides SMc00139: SMc00139 - L-lysine ABC transporter, permease component 1 (from data), at 2,031,583 to 2,032,386 SMc00139 SMc00138: SMc00138 - L-lysine ABC transporter, permease component 2 (from data), at 2,032,383 to 2,033,213 SMc00138 SMc00137: SMc00137 - hypothetical protein, at 2,033,385 to 2,033,651 SMc00137 SMc00136: SMc00136 - oxidoreductase, at 2,033,792 to 2,034,496 SMc00136 SMc00135: SMc00135 - hypothetical protein, at 2,034,616 to 2,035,347 SMc00135 Position (kb) 2033 2034Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2032.586 kb on - strand, within SMc00138at 2032.689 kb on + strand, within SMc00138at 2032.695 kb on + strand, within SMc00138at 2032.695 kb on + strand, within SMc00138at 2032.695 kb on + strand, within SMc00138at 2032.695 kb on + strand, within SMc00138at 2032.695 kb on + strand, within SMc00138at 2032.695 kb on + strand, within SMc00138at 2032.695 kb on + strand, within SMc00138at 2032.696 kb on - strand, within SMc00138at 2032.696 kb on - strand, within SMc00138at 2032.696 kb on - strand, within SMc00138at 2032.696 kb on - strand, within SMc00138at 2032.696 kb on - strand, within SMc00138at 2032.696 kb on - strand, within SMc00138at 2032.696 kb on - strand, within SMc00138at 2032.696 kb on - strand, within SMc00138at 2032.701 kb on + strand, within SMc00138at 2032.746 kb on + strand, within SMc00138at 2032.746 kb on + strand, within SMc00138at 2032.746 kb on + strand, within SMc00138at 2032.747 kb on - strand, within SMc00138at 2032.747 kb on - strand, within SMc00138at 2032.747 kb on - strand, within SMc00138at 2032.747 kb on - strand, within SMc00138at 2032.747 kb on - strand, within SMc00138at 2032.750 kb on - strand, within SMc00138at 2032.945 kb on + strand, within SMc00138at 2032.946 kb on - strand, within SMc00138at 2032.984 kb on + strand, within SMc00138at 2033.115 kb on + strand, within SMc00138at 2033.115 kb on + strand, within SMc00138at 2033.115 kb on + strand, within SMc00138at 2033.115 kb on + strand, within SMc00138at 2033.115 kb on + strand, within SMc00138at 2033.115 kb on + strand, within SMc00138at 2033.115 kb on + strand, within SMc00138at 2033.116 kb on - strand, within SMc00138at 2033.116 kb on - strand, within SMc00138at 2033.116 kb on - strand, within SMc00138at 2033.118 kb on - strand, within SMc00138at 2033.137 kb on - strandat 2033.137 kb on - strandat 2033.242 kb on + strandat 2033.290 kb on - strandat 2033.306 kb on + strandat 2033.319 kb on + strandat 2033.330 kb on + strandat 2033.352 kb on + strandat 2033.352 kb on + strandat 2033.353 kb on - strandat 2033.353 kb on - strandat 2033.418 kb on + strand, within SMc00137at 2033.440 kb on + strand, within SMc00137at 2033.441 kb on - strand, within SMc00137at 2033.446 kb on - strand, within SMc00137at 2033.481 kb on + strand, within SMc00137at 2033.481 kb on + strand, within SMc00137at 2033.481 kb on + strand, within SMc00137at 2033.481 kb on + strand, within SMc00137at 2033.481 kb on + strand, within SMc00137at 2033.481 kb on + strand, within SMc00137at 2033.482 kb on - strand, within SMc00137at 2033.482 kb on - strand, within SMc00137at 2033.482 kb on - strand, within SMc00137at 2033.482 kb on - strand, within SMc00137at 2033.482 kb on - strand, within SMc00137at 2033.482 kb on - strand, within SMc00137at 2033.482 kb on - strand, within SMc00137at 2033.482 kb on - strand, within SMc00137at 2033.496 kb on + strand, within SMc00137at 2033.583 kb on + strand, within SMc00137at 2033.584 kb on - strand, within SMc00137at 2033.584 kb on - strand, within SMc00137at 2033.584 kb on - strand, within SMc00137at 2033.584 kb on - strand, within SMc00137at 2033.842 kb on + strandat 2033.842 kb on + strandat 2033.843 kb on - strandat 2033.844 kb on + strandat 2033.845 kb on - strandat 2033.845 kb on - strandat 2033.845 kb on - strandat 2033.989 kb on + strand, within SMc00136at 2034.093 kb on + strand, within SMc00136at 2034.093 kb on + strand, within SMc00136at 2034.093 kb on + strand, within SMc00136at 2034.093 kb on + strand, within SMc00136at 2034.094 kb on - strand, within SMc00136at 2034.094 kb on - strand, within SMc00136at 2034.103 kb on + strand, within SMc00136at 2034.180 kb on + strand, within SMc00136at 2034.180 kb on + strand, within SMc00136at 2034.181 kb on - strand, within SMc00136at 2034.181 kb on - strand, within SMc00136at 2034.181 kb on - strand, within SMc00136at 2034.412 kb on - strand, within SMc00136at 2034.412 kb on - strand, within SMc00136

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,032,586 - SMc00138 0.24 -0.0
2,032,689 + SMc00138 0.37 +1.2
2,032,695 + SMc00138 0.38 +0.1
2,032,695 + SMc00138 0.38 +1.0
2,032,695 + SMc00138 0.38 +0.5
2,032,695 + SMc00138 0.38 +0.6
2,032,695 + SMc00138 0.38 +0.2
2,032,695 + SMc00138 0.38 +0.7
2,032,695 + SMc00138 0.38 -0.2
2,032,696 - SMc00138 0.38 -0.5
2,032,696 - SMc00138 0.38 +1.0
2,032,696 - SMc00138 0.38 +0.4
2,032,696 - SMc00138 0.38 -0.6
2,032,696 - SMc00138 0.38 +0.7
2,032,696 - SMc00138 0.38 +0.8
2,032,696 - SMc00138 0.38 +0.5
2,032,696 - SMc00138 0.38 +0.8
2,032,701 + SMc00138 0.38 +1.8
2,032,746 + SMc00138 0.44 +0.0
2,032,746 + SMc00138 0.44 +0.0
2,032,746 + SMc00138 0.44 +0.6
2,032,747 - SMc00138 0.44 +1.0
2,032,747 - SMc00138 0.44 +0.8
2,032,747 - SMc00138 0.44 +0.3
2,032,747 - SMc00138 0.44 +0.7
2,032,747 - SMc00138 0.44 +1.1
2,032,750 - SMc00138 0.44 -0.1
2,032,945 + SMc00138 0.68 -0.7
2,032,946 - SMc00138 0.68 -1.5
2,032,984 + SMc00138 0.72 +1.2
2,033,115 + SMc00138 0.88 +1.0
2,033,115 + SMc00138 0.88 +0.1
2,033,115 + SMc00138 0.88 -0.4
2,033,115 + SMc00138 0.88 +0.7
2,033,115 + SMc00138 0.88 -0.1
2,033,115 + SMc00138 0.88 +3.8
2,033,115 + SMc00138 0.88 +0.2
2,033,116 - SMc00138 0.88 -0.6
2,033,116 - SMc00138 0.88 +0.7
2,033,116 - SMc00138 0.88 +1.8
2,033,118 - SMc00138 0.88 +0.6
2,033,137 - +0.3
2,033,137 - +1.1
2,033,242 + -0.1
2,033,290 - -0.1
2,033,306 + -0.1
2,033,319 + +1.2
2,033,330 + +0.2
2,033,352 + +0.2
2,033,352 + -0.9
2,033,353 - +0.0
2,033,353 - -2.2
2,033,418 + SMc00137 0.12 +0.3
2,033,440 + SMc00137 0.21 -0.2
2,033,441 - SMc00137 0.21 +0.0
2,033,446 - SMc00137 0.23 -0.2
2,033,481 + SMc00137 0.36 +0.1
2,033,481 + SMc00137 0.36 +2.4
2,033,481 + SMc00137 0.36 +0.6
2,033,481 + SMc00137 0.36 -0.9
2,033,481 + SMc00137 0.36 -0.4
2,033,481 + SMc00137 0.36 -0.8
2,033,482 - SMc00137 0.36 +0.7
2,033,482 - SMc00137 0.36 +0.5
2,033,482 - SMc00137 0.36 -0.0
2,033,482 - SMc00137 0.36 -0.9
2,033,482 - SMc00137 0.36 -0.2
2,033,482 - SMc00137 0.36 +0.5
2,033,482 - SMc00137 0.36 -0.8
2,033,482 - SMc00137 0.36 +0.2
2,033,496 + SMc00137 0.42 +1.3
2,033,583 + SMc00137 0.74 +0.6
2,033,584 - SMc00137 0.75 +1.4
2,033,584 - SMc00137 0.75 +0.4
2,033,584 - SMc00137 0.75 +0.1
2,033,584 - SMc00137 0.75 +0.0
2,033,842 + +0.4
2,033,842 + -0.8
2,033,843 - -0.0
2,033,844 + -0.2
2,033,845 - +0.7
2,033,845 - -0.1
2,033,845 - +2.1
2,033,989 + SMc00136 0.28 +0.8
2,034,093 + SMc00136 0.43 +0.1
2,034,093 + SMc00136 0.43 +0.3
2,034,093 + SMc00136 0.43 +0.2
2,034,093 + SMc00136 0.43 -0.1
2,034,094 - SMc00136 0.43 -0.5
2,034,094 - SMc00136 0.43 +0.1
2,034,103 + SMc00136 0.44 -2.0
2,034,180 + SMc00136 0.55 +0.3
2,034,180 + SMc00136 0.55 +1.0
2,034,181 - SMc00136 0.55 +0.1
2,034,181 - SMc00136 0.55 -0.3
2,034,181 - SMc00136 0.55 +0.7
2,034,412 - SMc00136 0.88 -0.4
2,034,412 - SMc00136 0.88 +0.7

Or see this region's nucleotide sequence