Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00028 and SMc00088 are separated by 83 nucleotides SMc00088 and SMc00126 are separated by 279 nucleotides SMc00126 and SMc00029 are separated by 236 nucleotides SMc00029 and SMc00089 are separated by 5 nucleotides
SMc00028: SMc00028 - hypothetical protein, at 1,030,480 to 1,033,095
SMc00028
SMc00088: SMc00088 - hypothetical protein, at 1,033,179 to 1,033,592
SMc00088
SMc00126: SMc00126 - tRNA-Pro, at 1,033,872 to 1,033,948
SMc00126
SMc00029: SMc00029 - hypothetical protein, at 1,034,185 to 1,034,328
SMc00029
SMc00089: SMc00089 - hypothetical protein, at 1,034,334 to 1,034,690
SMc00089
Position (kb)
1033
1034 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1032.207 kb on + strand, within SMc00028 at 1032.239 kb on + strand, within SMc00028 at 1032.239 kb on + strand, within SMc00028 at 1032.239 kb on + strand, within SMc00028 at 1032.240 kb on - strand, within SMc00028 at 1032.240 kb on - strand, within SMc00028 at 1032.330 kb on + strand, within SMc00028 at 1032.343 kb on + strand, within SMc00028 at 1032.343 kb on + strand, within SMc00028 at 1032.382 kb on + strand, within SMc00028 at 1032.382 kb on + strand, within SMc00028 at 1032.703 kb on + strand, within SMc00028 at 1032.806 kb on + strand, within SMc00028 at 1033.097 kb on + strand at 1033.098 kb on - strand at 1033.098 kb on - strand at 1033.098 kb on - strand at 1033.098 kb on - strand at 1033.273 kb on + strand, within SMc00088 at 1033.313 kb on - strand, within SMc00088 at 1033.605 kb on + strand at 1033.606 kb on - strand at 1033.606 kb on - strand at 1033.606 kb on - strand at 1033.606 kb on - strand at 1033.609 kb on + strand at 1033.609 kb on + strand at 1033.609 kb on + strand at 1033.609 kb on + strand at 1033.610 kb on - strand at 1033.610 kb on - strand at 1033.610 kb on - strand at 1033.677 kb on + strand at 1033.678 kb on - strand at 1033.754 kb on + strand at 1033.852 kb on + strand at 1033.855 kb on - strand at 1033.968 kb on + strand at 1033.969 kb on - strand at 1033.993 kb on + strand at 1034.037 kb on - strand at 1034.153 kb on + strand at 1034.153 kb on + strand at 1034.154 kb on - strand at 1034.200 kb on - strand, within SMc00029 at 1034.211 kb on - strand, within SMc00029 at 1034.257 kb on + strand, within SMc00029 at 1034.434 kb on + strand, within SMc00089 at 1034.434 kb on + strand, within SMc00089 at 1034.434 kb on + strand, within SMc00089 at 1034.435 kb on - strand, within SMc00089 at 1034.435 kb on - strand, within SMc00089 at 1034.435 kb on - strand, within SMc00089
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,032,207 + SMc00028 0.66 -1.7 1,032,239 + SMc00028 0.67 -0.7 1,032,239 + SMc00028 0.67 +0.1 1,032,239 + SMc00028 0.67 -0.9 1,032,240 - SMc00028 0.67 -0.5 1,032,240 - SMc00028 0.67 +0.1 1,032,330 + SMc00028 0.71 +0.5 1,032,343 + SMc00028 0.71 +0.2 1,032,343 + SMc00028 0.71 -0.3 1,032,382 + SMc00028 0.73 -0.1 1,032,382 + SMc00028 0.73 +0.5 1,032,703 + SMc00028 0.85 -0.3 1,032,806 + SMc00028 0.89 -0.8 1,033,097 + -0.3 1,033,098 - -0.7 1,033,098 - -0.5 1,033,098 - -0.2 1,033,098 - -0.1 1,033,273 + SMc00088 0.23 -0.8 1,033,313 - SMc00088 0.32 -2.3 1,033,605 + -0.6 1,033,606 - +1.1 1,033,606 - +0.9 1,033,606 - -0.7 1,033,606 - -0.1 1,033,609 + -0.2 1,033,609 + -1.3 1,033,609 + +0.3 1,033,609 + -0.5 1,033,610 - +0.0 1,033,610 - -0.6 1,033,610 - +0.1 1,033,677 + -1.6 1,033,678 - -1.1 1,033,754 + -0.7 1,033,852 + +3.0 1,033,855 - +4.1 1,033,968 + +0.1 1,033,969 - +0.5 1,033,993 + +0.3 1,034,037 - -0.3 1,034,153 + -1.2 1,034,153 + -0.4 1,034,154 - -0.6 1,034,200 - SMc00029 0.10 +0.1 1,034,211 - SMc00029 0.18 +0.2 1,034,257 + SMc00029 0.50 -0.2 1,034,434 + SMc00089 0.28 +0.1 1,034,434 + SMc00089 0.28 -0.2 1,034,434 + SMc00089 0.28 -0.9 1,034,435 - SMc00089 0.28 -0.1 1,034,435 - SMc00089 0.28 -0.5 1,034,435 - SMc00089 0.28 +0.1
Or see this region's nucleotide sequence