Strain Fitness in Sinorhizobium meliloti 1021 around SMc00088

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00028 and SMc00088 are separated by 83 nucleotidesSMc00088 and SMc00126 are separated by 279 nucleotidesSMc00126 and SMc00029 are separated by 236 nucleotidesSMc00029 and SMc00089 are separated by 5 nucleotides SMc00028: SMc00028 - hypothetical protein, at 1,030,480 to 1,033,095 SMc00028 SMc00088: SMc00088 - hypothetical protein, at 1,033,179 to 1,033,592 SMc00088 SMc00126: SMc00126 - tRNA-Pro, at 1,033,872 to 1,033,948 SMc00126 SMc00029: SMc00029 - hypothetical protein, at 1,034,185 to 1,034,328 SMc00029 SMc00089: SMc00089 - hypothetical protein, at 1,034,334 to 1,034,690 SMc00089 Position (kb) 1033 1034Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1032.207 kb on + strand, within SMc00028at 1032.239 kb on + strand, within SMc00028at 1032.239 kb on + strand, within SMc00028at 1032.239 kb on + strand, within SMc00028at 1032.240 kb on - strand, within SMc00028at 1032.240 kb on - strand, within SMc00028at 1032.330 kb on + strand, within SMc00028at 1032.343 kb on + strand, within SMc00028at 1032.343 kb on + strand, within SMc00028at 1032.382 kb on + strand, within SMc00028at 1032.382 kb on + strand, within SMc00028at 1032.703 kb on + strand, within SMc00028at 1032.806 kb on + strand, within SMc00028at 1033.097 kb on + strandat 1033.098 kb on - strandat 1033.098 kb on - strandat 1033.098 kb on - strandat 1033.098 kb on - strandat 1033.273 kb on + strand, within SMc00088at 1033.313 kb on - strand, within SMc00088at 1033.605 kb on + strandat 1033.606 kb on - strandat 1033.606 kb on - strandat 1033.606 kb on - strandat 1033.606 kb on - strandat 1033.609 kb on + strandat 1033.609 kb on + strandat 1033.609 kb on + strandat 1033.609 kb on + strandat 1033.610 kb on - strandat 1033.610 kb on - strandat 1033.610 kb on - strandat 1033.677 kb on + strandat 1033.678 kb on - strandat 1033.754 kb on + strandat 1033.852 kb on + strandat 1033.855 kb on - strandat 1033.968 kb on + strandat 1033.969 kb on - strandat 1033.993 kb on + strandat 1034.037 kb on - strandat 1034.153 kb on + strandat 1034.153 kb on + strandat 1034.154 kb on - strandat 1034.200 kb on - strand, within SMc00029at 1034.211 kb on - strand, within SMc00029at 1034.257 kb on + strand, within SMc00029at 1034.434 kb on + strand, within SMc00089at 1034.434 kb on + strand, within SMc00089at 1034.434 kb on + strand, within SMc00089at 1034.435 kb on - strand, within SMc00089at 1034.435 kb on - strand, within SMc00089at 1034.435 kb on - strand, within SMc00089

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,032,207 + SMc00028 0.66 -1.7
1,032,239 + SMc00028 0.67 -0.7
1,032,239 + SMc00028 0.67 +0.1
1,032,239 + SMc00028 0.67 -0.9
1,032,240 - SMc00028 0.67 -0.5
1,032,240 - SMc00028 0.67 +0.1
1,032,330 + SMc00028 0.71 +0.5
1,032,343 + SMc00028 0.71 +0.2
1,032,343 + SMc00028 0.71 -0.3
1,032,382 + SMc00028 0.73 -0.1
1,032,382 + SMc00028 0.73 +0.5
1,032,703 + SMc00028 0.85 -0.3
1,032,806 + SMc00028 0.89 -0.8
1,033,097 + -0.3
1,033,098 - -0.7
1,033,098 - -0.5
1,033,098 - -0.2
1,033,098 - -0.1
1,033,273 + SMc00088 0.23 -0.8
1,033,313 - SMc00088 0.32 -2.3
1,033,605 + -0.6
1,033,606 - +1.1
1,033,606 - +0.9
1,033,606 - -0.7
1,033,606 - -0.1
1,033,609 + -0.2
1,033,609 + -1.3
1,033,609 + +0.3
1,033,609 + -0.5
1,033,610 - +0.0
1,033,610 - -0.6
1,033,610 - +0.1
1,033,677 + -1.6
1,033,678 - -1.1
1,033,754 + -0.7
1,033,852 + +3.0
1,033,855 - +4.1
1,033,968 + +0.1
1,033,969 - +0.5
1,033,993 + +0.3
1,034,037 - -0.3
1,034,153 + -1.2
1,034,153 + -0.4
1,034,154 - -0.6
1,034,200 - SMc00029 0.10 +0.1
1,034,211 - SMc00029 0.18 +0.2
1,034,257 + SMc00029 0.50 -0.2
1,034,434 + SMc00089 0.28 +0.1
1,034,434 + SMc00089 0.28 -0.2
1,034,434 + SMc00089 0.28 -0.9
1,034,435 - SMc00089 0.28 -0.1
1,034,435 - SMc00089 0.28 -0.5
1,034,435 - SMc00089 0.28 +0.1

Or see this region's nucleotide sequence