Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2349 and SMa2351 overlap by 4 nucleotides SMa2351 and SMa2353 are separated by 4 nucleotides
SMa2349: SMa2349 - xanthine dehydrogenase iron-sulfur-binding subunit, at 1,323,061 to 1,323,708
SMa2349
SMa2351: SMa2351 - oxidoreductase, molybdopterin-binding subunit, at 1,323,705 to 1,324,655
SMa2351
SMa2353: SMa2353 - oxidoreductase, at 1,324,660 to 1,326,858
SMa2353
Position (kb)
1323
1324
1325 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1322.732 kb on + strand at 1322.816 kb on - strand at 1322.862 kb on - strand at 1323.002 kb on - strand at 1323.015 kb on + strand at 1323.022 kb on + strand at 1323.023 kb on - strand at 1323.023 kb on - strand at 1323.040 kb on + strand at 1323.303 kb on + strand, within SMa2349 at 1323.558 kb on + strand, within SMa2349 at 1323.640 kb on - strand, within SMa2349 at 1323.642 kb on - strand, within SMa2349 at 1323.658 kb on + strand at 1323.720 kb on + strand at 1323.909 kb on - strand, within SMa2351 at 1323.929 kb on + strand, within SMa2351 at 1323.966 kb on + strand, within SMa2351 at 1323.967 kb on - strand, within SMa2351 at 1324.066 kb on - strand, within SMa2351 at 1324.066 kb on - strand, within SMa2351 at 1324.072 kb on - strand, within SMa2351 at 1324.095 kb on - strand, within SMa2351 at 1324.095 kb on - strand, within SMa2351 at 1324.413 kb on + strand, within SMa2351 at 1324.709 kb on + strand at 1324.710 kb on - strand at 1324.768 kb on + strand at 1324.769 kb on - strand at 1324.775 kb on - strand at 1324.787 kb on + strand at 1324.801 kb on + strand at 1324.802 kb on - strand at 1324.802 kb on - strand at 1324.807 kb on + strand at 1324.813 kb on + strand at 1324.813 kb on + strand at 1324.813 kb on + strand at 1324.813 kb on + strand at 1324.814 kb on - strand at 1324.814 kb on - strand at 1324.814 kb on - strand at 1324.814 kb on - strand at 1324.814 kb on - strand at 1324.814 kb on - strand at 1324.814 kb on - strand at 1324.815 kb on + strand at 1324.815 kb on + strand at 1324.816 kb on - strand at 1324.940 kb on - strand, within SMa2353 at 1324.941 kb on + strand, within SMa2353 at 1324.942 kb on - strand, within SMa2353 at 1324.981 kb on + strand, within SMa2353 at 1325.060 kb on - strand, within SMa2353 at 1325.194 kb on + strand, within SMa2353 at 1325.194 kb on + strand, within SMa2353 at 1325.195 kb on - strand, within SMa2353 at 1325.195 kb on - strand, within SMa2353 at 1325.195 kb on - strand, within SMa2353 at 1325.196 kb on + strand, within SMa2353 at 1325.196 kb on + strand, within SMa2353 at 1325.196 kb on + strand, within SMa2353 at 1325.197 kb on - strand, within SMa2353 at 1325.454 kb on - strand, within SMa2353 at 1325.635 kb on + strand, within SMa2353 at 1325.635 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,322,732 + -0.9 1,322,816 - +0.3 1,322,862 - -1.6 1,323,002 - +0.8 1,323,015 + +1.1 1,323,022 + +0.3 1,323,023 - -1.9 1,323,023 - -0.0 1,323,040 + -0.9 1,323,303 + SMa2349 0.37 -0.4 1,323,558 + SMa2349 0.77 +0.2 1,323,640 - SMa2349 0.89 -1.0 1,323,642 - SMa2349 0.90 -0.4 1,323,658 + -0.5 1,323,720 + +0.2 1,323,909 - SMa2351 0.21 +0.0 1,323,929 + SMa2351 0.24 -1.4 1,323,966 + SMa2351 0.27 +1.1 1,323,967 - SMa2351 0.28 -1.0 1,324,066 - SMa2351 0.38 +0.1 1,324,066 - SMa2351 0.38 -1.3 1,324,072 - SMa2351 0.39 +0.1 1,324,095 - SMa2351 0.41 -0.6 1,324,095 - SMa2351 0.41 -0.5 1,324,413 + SMa2351 0.74 +0.2 1,324,709 + -1.0 1,324,710 - +1.3 1,324,768 + -0.7 1,324,769 - +0.1 1,324,775 - -0.9 1,324,787 + -0.0 1,324,801 + +2.1 1,324,802 - -0.2 1,324,802 - -0.6 1,324,807 + -0.2 1,324,813 + -0.0 1,324,813 + +1.5 1,324,813 + -0.0 1,324,813 + -0.8 1,324,814 - -0.1 1,324,814 - -0.9 1,324,814 - +0.7 1,324,814 - -0.9 1,324,814 - -1.2 1,324,814 - +0.1 1,324,814 - +0.1 1,324,815 + +0.2 1,324,815 + -0.4 1,324,816 - -1.6 1,324,940 - SMa2353 0.13 +0.3 1,324,941 + SMa2353 0.13 -0.0 1,324,942 - SMa2353 0.13 -0.6 1,324,981 + SMa2353 0.15 +0.1 1,325,060 - SMa2353 0.18 +0.4 1,325,194 + SMa2353 0.24 +1.4 1,325,194 + SMa2353 0.24 -1.1 1,325,195 - SMa2353 0.24 +0.6 1,325,195 - SMa2353 0.24 +1.0 1,325,195 - SMa2353 0.24 -0.1 1,325,196 + SMa2353 0.24 +0.7 1,325,196 + SMa2353 0.24 -0.1 1,325,196 + SMa2353 0.24 +0.2 1,325,197 - SMa2353 0.24 -0.6 1,325,454 - SMa2353 0.36 +0.5 1,325,635 + SMa2353 0.44 -0.8 1,325,635 + +1.1
Or see this region's nucleotide sequence