Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2163 and SMa2165 are separated by 125 nucleotides
SMa2163: SMa2163 - AraC family transcriptional regulator, at 1,218,608 to 1,219,489
SMa2163
SMa2165: SMa2165 - short chain, at 1,219,615 to 1,220,355
SMa2165
Position (kb)
1219
1220
1221 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1218.667 kb on + strand at 1218.668 kb on - strand at 1218.716 kb on - strand, within SMa2163 at 1218.761 kb on - strand, within SMa2163 at 1218.771 kb on + strand, within SMa2163 at 1218.771 kb on + strand, within SMa2163 at 1218.822 kb on - strand, within SMa2163 at 1218.822 kb on - strand, within SMa2163 at 1219.051 kb on + strand, within SMa2163 at 1219.052 kb on - strand, within SMa2163 at 1219.052 kb on - strand, within SMa2163 at 1219.052 kb on - strand, within SMa2163 at 1219.056 kb on - strand, within SMa2163 at 1219.056 kb on - strand, within SMa2163 at 1219.088 kb on + strand, within SMa2163 at 1219.089 kb on - strand, within SMa2163 at 1219.140 kb on - strand, within SMa2163 at 1219.173 kb on - strand, within SMa2163 at 1219.173 kb on - strand, within SMa2163 at 1219.173 kb on - strand, within SMa2163 at 1219.221 kb on + strand, within SMa2163 at 1219.221 kb on + strand, within SMa2163 at 1219.237 kb on + strand, within SMa2163 at 1219.238 kb on - strand, within SMa2163 at 1219.853 kb on + strand, within SMa2165 at 1219.957 kb on - strand, within SMa2165 at 1219.957 kb on - strand, within SMa2165 at 1219.985 kb on + strand, within SMa2165 at 1219.985 kb on + strand, within SMa2165 at 1219.989 kb on - strand, within SMa2165 at 1219.989 kb on - strand, within SMa2165 at 1220.032 kb on + strand, within SMa2165 at 1220.033 kb on - strand, within SMa2165 at 1220.033 kb on - strand, within SMa2165 at 1220.033 kb on - strand, within SMa2165 at 1220.219 kb on + strand, within SMa2165 at 1220.219 kb on + strand, within SMa2165 at 1220.220 kb on - strand, within SMa2165 at 1220.323 kb on + strand at 1220.323 kb on + strand at 1220.324 kb on - strand at 1220.543 kb on - strand at 1220.572 kb on - strand at 1220.651 kb on - strand at 1220.662 kb on + strand at 1220.663 kb on - strand at 1220.682 kb on - strand at 1220.682 kb on - strand at 1220.706 kb on + strand at 1220.763 kb on + strand at 1220.808 kb on + strand at 1220.867 kb on + strand at 1220.961 kb on + strand at 1220.962 kb on - strand at 1220.962 kb on - strand at 1220.962 kb on - strand at 1220.962 kb on - strand at 1221.090 kb on + strand at 1221.091 kb on - strand at 1221.155 kb on + strand at 1221.155 kb on + strand at 1221.155 kb on + strand at 1221.163 kb on + strand at 1221.164 kb on - strand at 1221.237 kb on + strand at 1221.296 kb on - strand at 1221.300 kb on + strand at 1221.300 kb on + strand at 1221.321 kb on + strand at 1221.321 kb on + strand at 1221.322 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,218,667 + -0.2 1,218,668 - +1.1 1,218,716 - SMa2163 0.12 +0.2 1,218,761 - SMa2163 0.17 -0.6 1,218,771 + SMa2163 0.18 -0.2 1,218,771 + SMa2163 0.18 -1.6 1,218,822 - SMa2163 0.24 -0.6 1,218,822 - SMa2163 0.24 +0.2 1,219,051 + SMa2163 0.50 +0.4 1,219,052 - SMa2163 0.50 -0.1 1,219,052 - SMa2163 0.50 -0.4 1,219,052 - SMa2163 0.50 -0.5 1,219,056 - SMa2163 0.51 +0.0 1,219,056 - SMa2163 0.51 -0.4 1,219,088 + SMa2163 0.54 -0.1 1,219,089 - SMa2163 0.55 +0.3 1,219,140 - SMa2163 0.60 -0.3 1,219,173 - SMa2163 0.64 +0.3 1,219,173 - SMa2163 0.64 -0.5 1,219,173 - SMa2163 0.64 -1.2 1,219,221 + SMa2163 0.70 -0.5 1,219,221 + SMa2163 0.70 +2.1 1,219,237 + SMa2163 0.71 +0.1 1,219,238 - SMa2163 0.71 -1.8 1,219,853 + SMa2165 0.32 +0.1 1,219,957 - SMa2165 0.46 +0.7 1,219,957 - SMa2165 0.46 +0.3 1,219,985 + SMa2165 0.50 +0.2 1,219,985 + SMa2165 0.50 +0.2 1,219,989 - SMa2165 0.50 +0.3 1,219,989 - SMa2165 0.50 +0.2 1,220,032 + SMa2165 0.56 -1.0 1,220,033 - SMa2165 0.56 +0.5 1,220,033 - SMa2165 0.56 +0.5 1,220,033 - SMa2165 0.56 +0.8 1,220,219 + SMa2165 0.82 +0.7 1,220,219 + SMa2165 0.82 +1.7 1,220,220 - SMa2165 0.82 +0.0 1,220,323 + -1.1 1,220,323 + +0.6 1,220,324 - -0.1 1,220,543 - +0.0 1,220,572 - +0.0 1,220,651 - +0.1 1,220,662 + -1.8 1,220,663 - -0.7 1,220,682 - -0.1 1,220,682 - -1.0 1,220,706 + -3.2 1,220,763 + -0.7 1,220,808 + -1.9 1,220,867 + -0.1 1,220,961 + -1.0 1,220,962 - -0.6 1,220,962 - -0.5 1,220,962 - -0.0 1,220,962 - +1.3 1,221,090 + -0.1 1,221,091 - -0.1 1,221,155 + -1.1 1,221,155 + +0.5 1,221,155 + -0.1 1,221,163 + -0.7 1,221,164 - -0.5 1,221,237 + -0.4 1,221,296 - +1.0 1,221,300 + -0.5 1,221,300 + -0.2 1,221,321 + +0.6 1,221,321 + +0.1 1,221,322 - -1.9
Or see this region's nucleotide sequence