Strain Fitness in Sinorhizobium meliloti 1021 around SMa1606

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1604 and SMa1606 overlap by 4 nucleotidesSMa1606 and SMa1608 are separated by 450 nucleotidesSMa1608 and SMa1610 overlap by 1 nucleotides SMa1604: SMa1604 - NADH:flavin oxidoreductase / NADH oxidase, at 894,831 to 895,922 SMa1604 SMa1606: SMa1606 - hypothetical protein, at 895,919 to 896,896 SMa1606 SMa1608: SMa1608 - hypothetical protein, at 897,347 to 897,643 SMa1608 SMa1610: SMa1610 - transposase, at 897,643 to 897,906 SMa1610 Position (kb) 895 896 897Strain fitness (log2 ratio) -2 -1 0 1 2 3at 894.942 kb on - strand, within SMa1604at 894.970 kb on - strand, within SMa1604at 894.970 kb on - strand, within SMa1604at 895.038 kb on + strand, within SMa1604at 895.038 kb on + strand, within SMa1604at 895.038 kb on + strand, within SMa1604at 895.060 kb on - strand, within SMa1604at 895.128 kb on + strand, within SMa1604at 895.154 kb on + strand, within SMa1604at 895.378 kb on - strand, within SMa1604at 895.578 kb on + strand, within SMa1604at 895.585 kb on - strand, within SMa1604at 895.620 kb on + strand, within SMa1604at 895.620 kb on + strand, within SMa1604at 895.620 kb on + strand, within SMa1604at 895.621 kb on - strand, within SMa1604at 895.621 kb on - strand, within SMa1604at 895.621 kb on - strand, within SMa1604at 895.643 kb on + strand, within SMa1604at 895.855 kb on - strandat 896.108 kb on - strand, within SMa1606at 896.229 kb on - strand, within SMa1606at 896.412 kb on - strand, within SMa1606at 896.412 kb on - strand, within SMa1606at 896.412 kb on - strand, within SMa1606at 896.415 kb on + strand, within SMa1606at 896.415 kb on + strand, within SMa1606at 896.415 kb on + strand, within SMa1606at 896.503 kb on + strand, within SMa1606at 896.503 kb on + strand, within SMa1606at 896.504 kb on - strand, within SMa1606at 896.509 kb on + strand, within SMa1606at 896.549 kb on + strand, within SMa1606at 896.550 kb on - strand, within SMa1606at 896.680 kb on + strand, within SMa1606at 896.795 kb on + strand, within SMa1606at 896.796 kb on - strand, within SMa1606at 896.796 kb on - strand, within SMa1606at 896.843 kb on - strandat 896.901 kb on + strandat 896.902 kb on - strandat 896.902 kb on - strandat 897.002 kb on + strandat 897.002 kb on + strandat 897.019 kb on + strandat 897.040 kb on - strandat 897.307 kb on + strandat 897.307 kb on + strandat 897.308 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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894,942 - SMa1604 0.10 +0.1
894,970 - SMa1604 0.13 +0.4
894,970 - SMa1604 0.13 +0.4
895,038 + SMa1604 0.19 -0.1
895,038 + SMa1604 0.19 +0.8
895,038 + SMa1604 0.19 +0.3
895,060 - SMa1604 0.21 +0.4
895,128 + SMa1604 0.27 +0.1
895,154 + SMa1604 0.30 -1.3
895,378 - SMa1604 0.50 +0.1
895,578 + SMa1604 0.68 -0.5
895,585 - SMa1604 0.69 +1.1
895,620 + SMa1604 0.72 +0.1
895,620 + SMa1604 0.72 -0.3
895,620 + SMa1604 0.72 +1.1
895,621 - SMa1604 0.72 +0.4
895,621 - SMa1604 0.72 -2.6
895,621 - SMa1604 0.72 +0.2
895,643 + SMa1604 0.74 -0.4
895,855 - -0.1
896,108 - SMa1606 0.19 -0.2
896,229 - SMa1606 0.32 -0.3
896,412 - SMa1606 0.50 -0.3
896,412 - SMa1606 0.50 -0.1
896,412 - SMa1606 0.50 -0.1
896,415 + SMa1606 0.51 +1.1
896,415 + SMa1606 0.51 +0.2
896,415 + SMa1606 0.51 -0.3
896,503 + SMa1606 0.60 +0.3
896,503 + SMa1606 0.60 -0.0
896,504 - SMa1606 0.60 -0.0
896,509 + SMa1606 0.60 +2.2
896,549 + SMa1606 0.64 -0.2
896,550 - SMa1606 0.65 +1.1
896,680 + SMa1606 0.78 +1.1
896,795 + SMa1606 0.90 +0.5
896,796 - SMa1606 0.90 +1.1
896,796 - SMa1606 0.90 +0.6
896,843 - +0.1
896,901 + -0.9
896,902 - +1.2
896,902 - +0.3
897,002 + +0.5
897,002 + -0.7
897,019 + +1.2
897,040 - +3.1
897,307 + +1.6
897,307 + -1.0
897,308 - -0.6

Or see this region's nucleotide sequence