Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1604 and SMa1606 overlap by 4 nucleotides SMa1606 and SMa1608 are separated by 450 nucleotides SMa1608 and SMa1610 overlap by 1 nucleotides
SMa1604: SMa1604 - NADH:flavin oxidoreductase / NADH oxidase, at 894,831 to 895,922
SMa1604
SMa1606: SMa1606 - hypothetical protein, at 895,919 to 896,896
SMa1606
SMa1608: SMa1608 - hypothetical protein, at 897,347 to 897,643
SMa1608
SMa1610: SMa1610 - transposase, at 897,643 to 897,906
SMa1610
Position (kb)
895
896
897 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 894.942 kb on - strand, within SMa1604 at 894.970 kb on - strand, within SMa1604 at 894.970 kb on - strand, within SMa1604 at 895.038 kb on + strand, within SMa1604 at 895.038 kb on + strand, within SMa1604 at 895.038 kb on + strand, within SMa1604 at 895.060 kb on - strand, within SMa1604 at 895.128 kb on + strand, within SMa1604 at 895.154 kb on + strand, within SMa1604 at 895.378 kb on - strand, within SMa1604 at 895.578 kb on + strand, within SMa1604 at 895.585 kb on - strand, within SMa1604 at 895.620 kb on + strand, within SMa1604 at 895.620 kb on + strand, within SMa1604 at 895.620 kb on + strand, within SMa1604 at 895.621 kb on - strand, within SMa1604 at 895.621 kb on - strand, within SMa1604 at 895.621 kb on - strand, within SMa1604 at 895.643 kb on + strand, within SMa1604 at 895.855 kb on - strand at 896.108 kb on - strand, within SMa1606 at 896.229 kb on - strand, within SMa1606 at 896.412 kb on - strand, within SMa1606 at 896.412 kb on - strand, within SMa1606 at 896.412 kb on - strand, within SMa1606 at 896.415 kb on + strand, within SMa1606 at 896.415 kb on + strand, within SMa1606 at 896.415 kb on + strand, within SMa1606 at 896.503 kb on + strand, within SMa1606 at 896.503 kb on + strand, within SMa1606 at 896.504 kb on - strand, within SMa1606 at 896.509 kb on + strand, within SMa1606 at 896.549 kb on + strand, within SMa1606 at 896.550 kb on - strand, within SMa1606 at 896.680 kb on + strand, within SMa1606 at 896.795 kb on + strand, within SMa1606 at 896.796 kb on - strand, within SMa1606 at 896.796 kb on - strand, within SMa1606 at 896.843 kb on - strand at 896.901 kb on + strand at 896.902 kb on - strand at 896.902 kb on - strand at 897.002 kb on + strand at 897.002 kb on + strand at 897.019 kb on + strand at 897.040 kb on - strand at 897.307 kb on + strand at 897.307 kb on + strand at 897.308 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 894,942 - SMa1604 0.10 +0.1 894,970 - SMa1604 0.13 +0.4 894,970 - SMa1604 0.13 +0.4 895,038 + SMa1604 0.19 -0.1 895,038 + SMa1604 0.19 +0.8 895,038 + SMa1604 0.19 +0.3 895,060 - SMa1604 0.21 +0.4 895,128 + SMa1604 0.27 +0.1 895,154 + SMa1604 0.30 -1.3 895,378 - SMa1604 0.50 +0.1 895,578 + SMa1604 0.68 -0.5 895,585 - SMa1604 0.69 +1.1 895,620 + SMa1604 0.72 +0.1 895,620 + SMa1604 0.72 -0.3 895,620 + SMa1604 0.72 +1.1 895,621 - SMa1604 0.72 +0.4 895,621 - SMa1604 0.72 -2.6 895,621 - SMa1604 0.72 +0.2 895,643 + SMa1604 0.74 -0.4 895,855 - -0.1 896,108 - SMa1606 0.19 -0.2 896,229 - SMa1606 0.32 -0.3 896,412 - SMa1606 0.50 -0.3 896,412 - SMa1606 0.50 -0.1 896,412 - SMa1606 0.50 -0.1 896,415 + SMa1606 0.51 +1.1 896,415 + SMa1606 0.51 +0.2 896,415 + SMa1606 0.51 -0.3 896,503 + SMa1606 0.60 +0.3 896,503 + SMa1606 0.60 -0.0 896,504 - SMa1606 0.60 -0.0 896,509 + SMa1606 0.60 +2.2 896,549 + SMa1606 0.64 -0.2 896,550 - SMa1606 0.65 +1.1 896,680 + SMa1606 0.78 +1.1 896,795 + SMa1606 0.90 +0.5 896,796 - SMa1606 0.90 +1.1 896,796 - SMa1606 0.90 +0.6 896,843 - +0.1 896,901 + -0.9 896,902 - +1.2 896,902 - +0.3 897,002 + +0.5 897,002 + -0.7 897,019 + +1.2 897,040 - +3.1 897,307 + +1.6 897,307 + -1.0 897,308 - -0.6
Or see this region's nucleotide sequence