Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1483 and SMa5009 are separated by 60 nucleotides SMa5009 and SMa1485 overlap by 4 nucleotides SMa1485 and SMa1487 are separated by 228 nucleotides SMa1487 and SMa1488 overlap by 4 nucleotides
SMa1483: SMa1483 - dehydrogenase, at 815,138 to 817,558
SMa1483
SMa5009: SMa5009 - hypothetical protein, at 817,619 to 817,969
SMa5009
SMa1485: SMa1485 - Permease, MFS, at 817,966 to 819,255
SMa1485
SMa1487: SMa1487 - cytochrome C, at 819,484 to 819,852
SMa1487
SMa1488: SMa1488 - oxidoreductase, at 819,849 to 822,092
SMa1488
Position (kb) 817
818
819
820 Strain fitness (log2 ratio) -2
-1
0
1
2 at 817.187 kb on + strand, within SMa1483 at 817.188 kb on - strand, within SMa1483 at 817.404 kb on - strand at 817.406 kb on - strand at 817.597 kb on - strand at 817.731 kb on + strand at 817.731 kb on + strand, within SMa5009 at 817.732 kb on - strand, within SMa5009 at 817.761 kb on + strand, within SMa5009 at 817.762 kb on - strand, within SMa5009 at 817.762 kb on - strand, within SMa5009 at 817.762 kb on - strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.764 kb on + strand, within SMa5009 at 817.765 kb on - strand, within SMa5009 at 817.834 kb on - strand, within SMa5009 at 817.858 kb on - strand, within SMa5009 at 817.858 kb on - strand, within SMa5009 at 817.973 kb on - strand at 818.420 kb on + strand, within SMa1485 at 818.420 kb on + strand, within SMa1485 at 818.753 kb on + strand, within SMa1485 at 818.754 kb on - strand, within SMa1485 at 818.754 kb on - strand, within SMa1485 at 818.940 kb on - strand, within SMa1485 at 819.108 kb on + strand, within SMa1485 at 819.109 kb on - strand, within SMa1485 at 819.255 kb on + strand at 819.255 kb on + strand at 819.255 kb on + strand at 819.256 kb on - strand at 819.256 kb on - strand at 819.268 kb on + strand at 819.270 kb on + strand at 819.270 kb on + strand at 819.271 kb on - strand at 819.309 kb on + strand at 819.309 kb on + strand at 819.309 kb on + strand at 819.309 kb on + strand at 819.310 kb on - strand at 819.341 kb on + strand at 819.372 kb on - strand at 819.372 kb on - strand at 819.372 kb on - strand at 819.424 kb on - strand at 819.424 kb on - strand at 819.485 kb on + strand at 819.485 kb on + strand at 819.485 kb on + strand at 819.495 kb on + strand at 819.630 kb on + strand, within SMa1487 at 819.631 kb on - strand, within SMa1487 at 819.631 kb on - strand, within SMa1487 at 819.644 kb on + strand, within SMa1487 at 819.644 kb on + strand, within SMa1487 at 819.645 kb on - strand, within SMa1487 at 820.054 kb on + strand at 820.084 kb on + strand, within SMa1488 at 820.084 kb on + strand, within SMa1488 at 820.085 kb on - strand, within SMa1488
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 817,187 + SMa1483 0.85 +0.0 817,188 - SMa1483 0.85 -0.5 817,404 - +0.0 817,406 - +0.8 817,597 - -0.0 817,731 + +2.0 817,731 + SMa5009 0.32 +0.9 817,732 - SMa5009 0.32 -0.1 817,761 + SMa5009 0.40 -1.0 817,762 - SMa5009 0.41 +0.3 817,762 - SMa5009 0.41 -0.1 817,762 - SMa5009 0.41 -0.2 817,764 + SMa5009 0.41 -0.4 817,764 + SMa5009 0.41 -1.0 817,764 + SMa5009 0.41 -0.0 817,764 + SMa5009 0.41 -0.7 817,764 + SMa5009 0.41 +0.2 817,764 + SMa5009 0.41 -0.2 817,764 + SMa5009 0.41 -2.1 817,765 - SMa5009 0.42 +0.2 817,834 - SMa5009 0.61 -0.4 817,858 - SMa5009 0.68 -1.7 817,858 - SMa5009 0.68 -0.0 817,973 - -1.1 818,420 + SMa1485 0.35 -0.4 818,420 + SMa1485 0.35 +0.8 818,753 + SMa1485 0.61 -0.9 818,754 - SMa1485 0.61 -0.3 818,754 - SMa1485 0.61 -0.1 818,940 - SMa1485 0.76 -2.7 819,108 + SMa1485 0.89 -0.9 819,109 - SMa1485 0.89 -0.4 819,255 + -0.1 819,255 + -0.0 819,255 + +0.2 819,256 - -0.8 819,256 - +0.1 819,268 + +0.9 819,270 + -1.0 819,270 + +0.7 819,271 - +0.1 819,309 + +1.3 819,309 + -0.4 819,309 + -1.9 819,309 + +0.2 819,310 - -0.3 819,341 + +0.6 819,372 - +0.2 819,372 - +0.8 819,372 - +1.0 819,424 - +0.9 819,424 - +0.0 819,485 + +0.3 819,485 + +1.2 819,485 + +0.1 819,495 + +0.4 819,630 + SMa1487 0.40 +0.3 819,631 - SMa1487 0.40 -0.2 819,631 - SMa1487 0.40 -0.1 819,644 + SMa1487 0.43 -0.1 819,644 + SMa1487 0.43 +0.9 819,645 - SMa1487 0.44 -0.7 820,054 + +0.9 820,084 + SMa1488 0.10 -1.8 820,084 + SMa1488 0.10 +0.1 820,085 - SMa1488 0.11 -0.6
Or see this region's nucleotide sequence