Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1466 and SMa1467 overlap by 4 nucleotides SMa1467 and SMa1471 are separated by 150 nucleotides SMa1471 and SMa1473 overlap by 1 nucleotides
SMa1466: SMa1466 - ABC transporter ATP-binding protein, at 807,254 to 808,369
SMa1466
SMa1467: SMa1467 - inner-membrane permease, at 808,366 to 809,028
SMa1467
SMa1471: SMa1471 - hypothetical protein, at 809,179 to 809,859
SMa1471
SMa1473: SMa1473 - aminopeptidase, at 809,859 to 811,163
SMa1473
Position (kb) 808
809
810 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 807.708 kb on + strand, within SMa1466 at 807.708 kb on + strand, within SMa1466 at 807.737 kb on - strand, within SMa1466 at 807.737 kb on - strand, within SMa1466 at 808.072 kb on + strand, within SMa1466 at 808.123 kb on - strand, within SMa1466 at 808.286 kb on + strand at 808.544 kb on + strand, within SMa1467 at 808.545 kb on - strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.716 kb on - strand, within SMa1467 at 808.716 kb on - strand, within SMa1467 at 808.716 kb on - strand, within SMa1467 at 808.745 kb on + strand, within SMa1467 at 808.760 kb on - strand, within SMa1467 at 808.775 kb on + strand, within SMa1467 at 808.775 kb on + strand, within SMa1467 at 808.776 kb on - strand, within SMa1467 at 808.987 kb on + strand at 808.988 kb on - strand at 809.050 kb on - strand at 809.050 kb on - strand at 809.167 kb on + strand at 809.220 kb on - strand at 809.263 kb on - strand, within SMa1471 at 809.263 kb on - strand, within SMa1471 at 809.315 kb on + strand, within SMa1471 at 809.316 kb on - strand, within SMa1471 at 809.316 kb on - strand, within SMa1471 at 809.316 kb on - strand, within SMa1471 at 809.386 kb on + strand, within SMa1471 at 809.387 kb on - strand, within SMa1471 at 809.541 kb on + strand, within SMa1471 at 809.541 kb on + strand, within SMa1471 at 809.680 kb on - strand, within SMa1471 at 809.681 kb on + strand, within SMa1471 at 809.681 kb on + strand, within SMa1471 at 809.681 kb on + strand, within SMa1471 at 809.682 kb on - strand, within SMa1471 at 809.759 kb on + strand, within SMa1471 at 809.927 kb on + strand at 809.982 kb on - strand at 809.983 kb on + strand at 809.983 kb on + strand at 809.984 kb on - strand at 809.984 kb on - strand at 809.984 kb on - strand at 810.019 kb on + strand, within SMa1473 at 810.019 kb on + strand, within SMa1473 at 810.020 kb on - strand, within SMa1473
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 807,708 + SMa1466 0.41 +1.0 807,708 + SMa1466 0.41 +0.7 807,737 - SMa1466 0.43 +0.2 807,737 - SMa1466 0.43 -2.2 808,072 + SMa1466 0.73 +0.6 808,123 - SMa1466 0.78 -0.0 808,286 + +0.5 808,544 + SMa1467 0.27 -0.3 808,545 - SMa1467 0.27 -0.8 808,715 + SMa1467 0.53 -0.3 808,715 + SMa1467 0.53 -0.3 808,715 + SMa1467 0.53 -0.0 808,715 + SMa1467 0.53 +0.8 808,715 + SMa1467 0.53 -0.7 808,716 - SMa1467 0.53 -0.4 808,716 - SMa1467 0.53 +0.1 808,716 - SMa1467 0.53 -1.5 808,745 + SMa1467 0.57 +0.2 808,760 - SMa1467 0.59 +0.0 808,775 + SMa1467 0.62 -0.2 808,775 + SMa1467 0.62 -0.6 808,776 - SMa1467 0.62 -0.2 808,987 + -0.2 808,988 - -0.3 809,050 - -1.7 809,050 - -0.1 809,167 + +0.8 809,220 - -0.4 809,263 - SMa1471 0.12 +0.5 809,263 - SMa1471 0.12 -0.1 809,315 + SMa1471 0.20 -2.8 809,316 - SMa1471 0.20 -0.8 809,316 - SMa1471 0.20 -0.8 809,316 - SMa1471 0.20 -1.0 809,386 + SMa1471 0.30 -0.6 809,387 - SMa1471 0.31 -0.6 809,541 + SMa1471 0.53 -0.6 809,541 + SMa1471 0.53 -0.4 809,680 - SMa1471 0.74 -0.0 809,681 + SMa1471 0.74 -0.6 809,681 + SMa1471 0.74 -0.5 809,681 + SMa1471 0.74 -0.3 809,682 - SMa1471 0.74 +0.2 809,759 + SMa1471 0.85 -1.1 809,927 + +0.2 809,982 - +0.1 809,983 + +1.1 809,983 + +1.4 809,984 - -0.3 809,984 - -0.1 809,984 - -1.0 810,019 + SMa1473 0.12 +0.3 810,019 + SMa1473 0.12 -0.5 810,020 - SMa1473 0.12 -0.0
Or see this region's nucleotide sequence