Strain Fitness in Sinorhizobium meliloti 1021 around SMa1264

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa1262 and SMa1264 are separated by 376 nucleotidesSMa1264 and SMa1266 are separated by 447 nucleotides SMa1262: SMa1262 - hypothetical protein, at 690,309 to 691,118 SMa1262 SMa1264: SMa1264 - hypothetical protein, at 691,495 to 692,028 SMa1264 SMa1266: SMa1266 - coproporphyrinogen III oxidase, at 692,476 to 693,828 SMa1266 Position (kb) 691 692 693Strain fitness (log2 ratio) -2 -1 0 1at 690.785 kb on + strand, within SMa1262at 690.861 kb on + strand, within SMa1262at 690.862 kb on - strand, within SMa1262at 690.867 kb on + strand, within SMa1262at 690.867 kb on + strand, within SMa1262at 690.867 kb on + strand, within SMa1262at 690.868 kb on - strand, within SMa1262at 690.874 kb on - strand, within SMa1262at 691.113 kb on + strandat 691.113 kb on + strandat 691.117 kb on - strandat 691.117 kb on - strandat 691.117 kb on - strandat 691.164 kb on - strandat 691.164 kb on - strandat 691.189 kb on + strandat 691.200 kb on + strandat 691.374 kb on + strandat 691.453 kb on + strandat 691.871 kb on + strand, within SMa1264at 691.934 kb on + strand, within SMa1264at 691.934 kb on + strand, within SMa1264at 691.937 kb on + strand, within SMa1264at 691.938 kb on - strand, within SMa1264at 691.957 kb on - strand, within SMa1264at 692.029 kb on - strandat 692.154 kb on - strandat 692.156 kb on - strandat 692.195 kb on + strandat 692.196 kb on - strandat 692.317 kb on + strandat 692.317 kb on + strandat 692.318 kb on - strandat 692.318 kb on - strandat 692.318 kb on - strandat 692.376 kb on + strandat 692.376 kb on + strandat 692.376 kb on + strandat 692.500 kb on + strandat 692.501 kb on - strandat 692.501 kb on - strandat 692.578 kb on + strandat 692.579 kb on - strandat 692.579 kb on - strandat 692.626 kb on + strand, within SMa1266at 692.663 kb on - strand, within SMa1266at 692.713 kb on + strand, within SMa1266at 692.744 kb on + strand, within SMa1266at 692.744 kb on + strand, within SMa1266at 692.745 kb on - strand, within SMa1266at 692.772 kb on + strand, within SMa1266at 692.811 kb on + strand, within SMa1266at 692.812 kb on - strand, within SMa1266at 692.843 kb on + strand, within SMa1266at 692.843 kb on + strand, within SMa1266at 692.843 kb on + strand, within SMa1266

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
690,785 + SMa1262 0.59 -1.3
690,861 + SMa1262 0.68 +0.3
690,862 - SMa1262 0.68 -0.3
690,867 + SMa1262 0.69 +0.4
690,867 + SMa1262 0.69 -0.7
690,867 + SMa1262 0.69 +0.8
690,868 - SMa1262 0.69 +0.3
690,874 - SMa1262 0.70 -0.7
691,113 + -0.5
691,113 + +0.2
691,117 - +0.0
691,117 - -0.5
691,117 - -0.3
691,164 - -0.2
691,164 - +0.7
691,189 + +0.3
691,200 + +0.3
691,374 + -0.2
691,453 + +0.6
691,871 + SMa1264 0.70 -1.1
691,934 + SMa1264 0.82 -0.5
691,934 + SMa1264 0.82 -0.3
691,937 + SMa1264 0.83 -0.1
691,938 - SMa1264 0.83 -1.0
691,957 - SMa1264 0.87 +0.1
692,029 - +0.5
692,154 - -0.1
692,156 - +0.4
692,195 + +1.1
692,196 - -0.1
692,317 + +0.3
692,317 + +1.2
692,318 - +0.4
692,318 - +0.0
692,318 - -0.4
692,376 + -0.8
692,376 + +0.0
692,376 + +0.8
692,500 + -1.6
692,501 - +0.3
692,501 - +0.1
692,578 + +0.6
692,579 - -0.7
692,579 - +0.6
692,626 + SMa1266 0.11 +0.2
692,663 - SMa1266 0.14 -0.7
692,713 + SMa1266 0.18 -0.3
692,744 + SMa1266 0.20 -0.3
692,744 + SMa1266 0.20 -0.2
692,745 - SMa1266 0.20 -0.1
692,772 + SMa1266 0.22 -0.1
692,811 + SMa1266 0.25 -0.6
692,812 - SMa1266 0.25 -2.0
692,843 + SMa1266 0.27 +0.3
692,843 + SMa1266 0.27 -0.6
692,843 + SMa1266 0.27 +0.3

Or see this region's nucleotide sequence