Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1262 and SMa1264 are separated by 376 nucleotides SMa1264 and SMa1266 are separated by 447 nucleotides
SMa1262: SMa1262 - hypothetical protein, at 690,309 to 691,118
SMa1262
SMa1264: SMa1264 - hypothetical protein, at 691,495 to 692,028
SMa1264
SMa1266: SMa1266 - coproporphyrinogen III oxidase, at 692,476 to 693,828
SMa1266
Position (kb)
691
692
693 Strain fitness (log2 ratio)
-2
-1
0
1 at 690.785 kb on + strand, within SMa1262 at 690.861 kb on + strand, within SMa1262 at 690.862 kb on - strand, within SMa1262 at 690.867 kb on + strand, within SMa1262 at 690.867 kb on + strand, within SMa1262 at 690.867 kb on + strand, within SMa1262 at 690.868 kb on - strand, within SMa1262 at 690.874 kb on - strand, within SMa1262 at 691.113 kb on + strand at 691.113 kb on + strand at 691.117 kb on - strand at 691.117 kb on - strand at 691.117 kb on - strand at 691.164 kb on - strand at 691.164 kb on - strand at 691.189 kb on + strand at 691.200 kb on + strand at 691.374 kb on + strand at 691.453 kb on + strand at 691.871 kb on + strand, within SMa1264 at 691.934 kb on + strand, within SMa1264 at 691.934 kb on + strand, within SMa1264 at 691.937 kb on + strand, within SMa1264 at 691.938 kb on - strand, within SMa1264 at 691.957 kb on - strand, within SMa1264 at 692.029 kb on - strand at 692.154 kb on - strand at 692.156 kb on - strand at 692.195 kb on + strand at 692.196 kb on - strand at 692.317 kb on + strand at 692.317 kb on + strand at 692.318 kb on - strand at 692.318 kb on - strand at 692.318 kb on - strand at 692.376 kb on + strand at 692.376 kb on + strand at 692.376 kb on + strand at 692.500 kb on + strand at 692.501 kb on - strand at 692.501 kb on - strand at 692.578 kb on + strand at 692.579 kb on - strand at 692.579 kb on - strand at 692.626 kb on + strand, within SMa1266 at 692.663 kb on - strand, within SMa1266 at 692.713 kb on + strand, within SMa1266 at 692.744 kb on + strand, within SMa1266 at 692.744 kb on + strand, within SMa1266 at 692.745 kb on - strand, within SMa1266 at 692.772 kb on + strand, within SMa1266 at 692.811 kb on + strand, within SMa1266 at 692.812 kb on - strand, within SMa1266 at 692.843 kb on + strand, within SMa1266 at 692.843 kb on + strand, within SMa1266 at 692.843 kb on + strand, within SMa1266
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 690,785 + SMa1262 0.59 -1.3 690,861 + SMa1262 0.68 +0.3 690,862 - SMa1262 0.68 -0.3 690,867 + SMa1262 0.69 +0.4 690,867 + SMa1262 0.69 -0.7 690,867 + SMa1262 0.69 +0.8 690,868 - SMa1262 0.69 +0.3 690,874 - SMa1262 0.70 -0.7 691,113 + -0.5 691,113 + +0.2 691,117 - +0.0 691,117 - -0.5 691,117 - -0.3 691,164 - -0.2 691,164 - +0.7 691,189 + +0.3 691,200 + +0.3 691,374 + -0.2 691,453 + +0.6 691,871 + SMa1264 0.70 -1.1 691,934 + SMa1264 0.82 -0.5 691,934 + SMa1264 0.82 -0.3 691,937 + SMa1264 0.83 -0.1 691,938 - SMa1264 0.83 -1.0 691,957 - SMa1264 0.87 +0.1 692,029 - +0.5 692,154 - -0.1 692,156 - +0.4 692,195 + +1.1 692,196 - -0.1 692,317 + +0.3 692,317 + +1.2 692,318 - +0.4 692,318 - +0.0 692,318 - -0.4 692,376 + -0.8 692,376 + +0.0 692,376 + +0.8 692,500 + -1.6 692,501 - +0.3 692,501 - +0.1 692,578 + +0.6 692,579 - -0.7 692,579 - +0.6 692,626 + SMa1266 0.11 +0.2 692,663 - SMa1266 0.14 -0.7 692,713 + SMa1266 0.18 -0.3 692,744 + SMa1266 0.20 -0.3 692,744 + SMa1266 0.20 -0.2 692,745 - SMa1266 0.20 -0.1 692,772 + SMa1266 0.22 -0.1 692,811 + SMa1266 0.25 -0.6 692,812 - SMa1266 0.25 -2.0 692,843 + SMa1266 0.27 +0.3 692,843 + SMa1266 0.27 -0.6 692,843 + SMa1266 0.27 +0.3
Or see this region's nucleotide sequence