Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1111 and SMa1113 are separated by 390 nucleotides SMa1113 and SMa1115 are separated by 232 nucleotides SMa1115 and SMa1118 are separated by 792 nucleotides
SMa1111: SMa1111 - hypothetical protein, at 604,938 to 605,630
SMa1111
SMa1113: SMa1113 - hypothetical protein, at 606,021 to 606,329
SMa1113
SMa1115: SMa1115 - Mn2+/Fe2+ transporter NRAMP family, at 606,562 to 607,890
SMa1115
SMa1118: SMa1118 - HspC2 heat shock protein, at 608,683 to 609,210
SMa1118
Position (kb) 606
607
608 Strain fitness (log2 ratio) -2
-1
0
1
2 at 605.988 kb on - strand at 605.988 kb on - strand at 606.069 kb on + strand, within SMa1113 at 606.070 kb on - strand, within SMa1113 at 606.072 kb on + strand, within SMa1113 at 606.169 kb on - strand, within SMa1113 at 606.281 kb on + strand, within SMa1113 at 606.281 kb on + strand, within SMa1113 at 606.282 kb on - strand, within SMa1113 at 606.282 kb on - strand, within SMa1113 at 606.298 kb on - strand, within SMa1113 at 606.318 kb on + strand at 606.370 kb on - strand at 606.377 kb on + strand at 606.496 kb on + strand at 606.500 kb on + strand at 606.508 kb on - strand at 606.508 kb on - strand at 606.533 kb on - strand at 606.725 kb on - strand, within SMa1115 at 606.725 kb on - strand, within SMa1115 at 607.041 kb on - strand, within SMa1115 at 607.041 kb on - strand, within SMa1115 at 607.054 kb on + strand, within SMa1115 at 607.055 kb on - strand, within SMa1115 at 607.055 kb on - strand, within SMa1115 at 607.229 kb on - strand, within SMa1115 at 607.351 kb on + strand, within SMa1115 at 607.351 kb on + strand, within SMa1115 at 607.351 kb on + strand, within SMa1115 at 607.351 kb on + strand, within SMa1115 at 607.351 kb on + strand, within SMa1115 at 607.352 kb on - strand, within SMa1115 at 607.352 kb on - strand, within SMa1115 at 607.352 kb on - strand, within SMa1115 at 607.415 kb on + strand, within SMa1115 at 607.415 kb on + strand, within SMa1115 at 607.532 kb on + strand, within SMa1115 at 607.532 kb on + strand, within SMa1115 at 607.568 kb on - strand, within SMa1115 at 607.646 kb on + strand, within SMa1115 at 607.647 kb on - strand, within SMa1115 at 607.665 kb on - strand, within SMa1115 at 607.699 kb on - strand, within SMa1115 at 607.699 kb on - strand, within SMa1115 at 607.889 kb on - strand at 608.059 kb on + strand at 608.268 kb on + strand at 608.269 kb on - strand at 608.299 kb on + strand at 608.300 kb on - strand at 608.300 kb on - strand at 608.302 kb on + strand at 608.372 kb on + strand at 608.372 kb on + strand at 608.373 kb on - strand at 608.384 kb on + strand at 608.394 kb on - strand at 608.498 kb on - strand at 608.552 kb on + strand at 608.553 kb on - strand at 608.595 kb on - strand at 608.657 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 605,988 - +0.8 605,988 - +0.1 606,069 + SMa1113 0.16 +0.0 606,070 - SMa1113 0.16 -0.3 606,072 + SMa1113 0.17 +0.3 606,169 - SMa1113 0.48 +1.1 606,281 + SMa1113 0.84 +0.4 606,281 + SMa1113 0.84 -0.4 606,282 - SMa1113 0.84 +0.7 606,282 - SMa1113 0.84 -1.7 606,298 - SMa1113 0.90 -0.4 606,318 + +1.1 606,370 - +0.2 606,377 + +0.8 606,496 + -1.2 606,500 + +0.2 606,508 - -1.1 606,508 - +1.2 606,533 - -0.1 606,725 - SMa1115 0.12 -0.4 606,725 - SMa1115 0.12 +0.6 607,041 - SMa1115 0.36 +0.1 607,041 - SMa1115 0.36 -0.9 607,054 + SMa1115 0.37 +0.5 607,055 - SMa1115 0.37 -0.0 607,055 - SMa1115 0.37 -0.1 607,229 - SMa1115 0.50 +1.0 607,351 + SMa1115 0.59 -0.4 607,351 + SMa1115 0.59 +1.7 607,351 + SMa1115 0.59 +0.1 607,351 + SMa1115 0.59 +0.3 607,351 + SMa1115 0.59 +0.8 607,352 - SMa1115 0.59 +0.4 607,352 - SMa1115 0.59 +0.2 607,352 - SMa1115 0.59 -0.4 607,415 + SMa1115 0.64 +0.4 607,415 + SMa1115 0.64 +2.3 607,532 + SMa1115 0.73 +0.4 607,532 + SMa1115 0.73 -1.0 607,568 - SMa1115 0.76 -0.1 607,646 + SMa1115 0.82 -0.3 607,647 - SMa1115 0.82 +0.0 607,665 - SMa1115 0.83 -0.2 607,699 - SMa1115 0.86 -0.9 607,699 - SMa1115 0.86 -1.4 607,889 - -0.2 608,059 + -0.9 608,268 + +0.1 608,269 - -0.8 608,299 + -1.0 608,300 - +0.2 608,300 - -0.5 608,302 + -0.2 608,372 + +1.2 608,372 + -1.5 608,373 - +0.1 608,384 + -0.4 608,394 - -0.7 608,498 - -0.7 608,552 + -0.7 608,553 - +0.2 608,595 - -2.0 608,657 + -0.7
Or see this region's nucleotide sequence