Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1016 and SMa1017 are separated by 142 nucleotides SMa1017 and SMa1018 overlap by 4 nucleotides SMa1018 and SMa1021 are separated by 180 nucleotides SMa1021 and SMa1024 are separated by 494 nucleotides
SMa1016: SMa1016 - acyltransferase, at 563,673 to 564,947
SMa1016
SMa1017: SMa1017 - hypothetical protein, at 565,090 to 565,296
SMa1017
SMa1018: SMa1018 - hypothetical protein, at 565,293 to 565,655
SMa1018
SMa1021: SMa1021 - hypothetical protein, at 565,836 to 566,402
SMa1021
SMa1024: SMa1024 - hypothetical protein, at 566,897 to 567,319
SMa1024
Position (kb) 565
566
567 Strain fitness (log2 ratio) -2
-1
0
1 at 564.877 kb on + strand at 564.886 kb on + strand at 564.887 kb on - strand at 564.887 kb on - strand at 564.951 kb on + strand at 564.955 kb on + strand at 564.973 kb on + strand at 564.974 kb on - strand at 565.067 kb on - strand at 565.094 kb on + strand at 565.094 kb on + strand at 565.095 kb on - strand at 565.095 kb on - strand at 565.135 kb on + strand, within SMa1017 at 565.136 kb on - strand, within SMa1017 at 565.339 kb on + strand, within SMa1018 at 565.339 kb on + strand, within SMa1018 at 565.340 kb on - strand, within SMa1018 at 565.340 kb on - strand, within SMa1018 at 565.340 kb on - strand, within SMa1018 at 565.340 kb on - strand, within SMa1018 at 565.340 kb on - strand, within SMa1018 at 565.554 kb on + strand, within SMa1018 at 565.752 kb on + strand at 565.752 kb on + strand at 565.776 kb on + strand at 565.818 kb on + strand at 565.874 kb on + strand at 565.875 kb on - strand at 566.051 kb on - strand, within SMa1021 at 566.051 kb on - strand, within SMa1021 at 566.100 kb on + strand, within SMa1021 at 566.101 kb on - strand, within SMa1021 at 566.289 kb on - strand, within SMa1021 at 566.382 kb on + strand at 566.382 kb on + strand at 566.382 kb on + strand at 566.485 kb on + strand at 566.486 kb on - strand at 566.506 kb on + strand at 566.507 kb on - strand at 566.512 kb on + strand at 566.513 kb on - strand at 566.533 kb on + strand at 566.533 kb on + strand at 566.692 kb on - strand at 566.696 kb on + strand at 566.696 kb on + strand at 566.701 kb on - strand at 566.819 kb on - strand at 566.826 kb on + strand at 566.827 kb on - strand at 566.827 kb on - strand at 567.361 kb on + strand at 567.361 kb on + strand at 567.361 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 564,877 + +0.8 564,886 + +0.3 564,887 - -0.3 564,887 - -0.3 564,951 + +0.1 564,955 + +0.3 564,973 + -0.9 564,974 - -0.0 565,067 - +0.0 565,094 + +0.1 565,094 + -0.2 565,095 - +0.2 565,095 - -0.0 565,135 + SMa1017 0.22 +0.1 565,136 - SMa1017 0.22 +0.6 565,339 + SMa1018 0.13 -1.4 565,339 + SMa1018 0.13 -0.2 565,340 - SMa1018 0.13 -0.2 565,340 - SMa1018 0.13 -0.2 565,340 - SMa1018 0.13 -1.2 565,340 - SMa1018 0.13 -0.2 565,340 - SMa1018 0.13 +0.3 565,554 + SMa1018 0.72 +0.7 565,752 + -1.3 565,752 + +0.4 565,776 + +0.1 565,818 + -2.2 565,874 + -1.1 565,875 - +0.5 566,051 - SMa1021 0.38 +1.2 566,051 - SMa1021 0.38 +0.1 566,100 + SMa1021 0.47 +0.2 566,101 - SMa1021 0.47 +0.6 566,289 - SMa1021 0.80 +0.3 566,382 + +0.7 566,382 + +0.7 566,382 + -1.4 566,485 + +0.8 566,486 - -0.0 566,506 + -0.0 566,507 - -0.5 566,512 + +0.2 566,513 - -0.1 566,533 + -0.1 566,533 + +0.9 566,692 - -1.1 566,696 + -1.3 566,696 + +0.2 566,701 - +0.8 566,819 - -0.2 566,826 + -0.6 566,827 - +0.6 566,827 - +0.5 567,361 + -0.6 567,361 + -0.6 567,361 + -0.2
Or see this region's nucleotide sequence