Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0890 and SMa0892 overlap by 1 nucleotides SMa0892 and SMa0894 are separated by 116 nucleotides SMa0894 and SMa0896 are separated by 166 nucleotides
SMa0890: SMa0890 - hypothetical protein, at 495,968 to 497,392
SMa0890
SMa0892: SMa0892 - DnaE3 DNA polymerase III alpha chain, at 497,392 to 500,655
SMa0892
SMa0894: SMa0894 - hypothetical protein, at 500,772 to 501,068
SMa0894
SMa0896: SMa0896 - hypothetical protein, at 501,235 to 501,954
SMa0896
Position (kb) 497
498
499
500
501 Strain fitness (log2 ratio) -2
-1
0
1
2 at 496.465 kb on + strand, within SMa0890 at 496.465 kb on + strand, within SMa0890 at 496.561 kb on + strand, within SMa0890 at 496.561 kb on + strand, within SMa0890 at 496.575 kb on + strand, within SMa0890 at 496.576 kb on - strand, within SMa0890 at 496.659 kb on - strand, within SMa0890 at 496.659 kb on - strand, within SMa0890 at 496.659 kb on - strand, within SMa0890 at 496.751 kb on - strand, within SMa0890 at 496.996 kb on - strand, within SMa0890 at 497.035 kb on + strand, within SMa0890 at 497.035 kb on + strand, within SMa0890 at 497.036 kb on - strand, within SMa0890 at 497.036 kb on - strand, within SMa0890 at 497.280 kb on - strand at 497.280 kb on - strand at 497.362 kb on + strand at 497.363 kb on - strand at 497.363 kb on - strand at 497.623 kb on + strand at 497.644 kb on + strand at 497.645 kb on - strand at 497.732 kb on - strand, within SMa0892 at 497.830 kb on + strand, within SMa0892 at 498.158 kb on - strand, within SMa0892 at 498.158 kb on - strand, within SMa0892 at 498.217 kb on + strand, within SMa0892 at 498.217 kb on + strand, within SMa0892 at 498.317 kb on - strand, within SMa0892 at 498.325 kb on + strand, within SMa0892 at 498.325 kb on + strand, within SMa0892 at 498.325 kb on + strand, within SMa0892 at 498.325 kb on + strand, within SMa0892 at 498.326 kb on - strand, within SMa0892 at 498.377 kb on + strand, within SMa0892 at 498.559 kb on + strand, within SMa0892 at 498.560 kb on - strand, within SMa0892 at 498.568 kb on + strand, within SMa0892 at 498.568 kb on + strand, within SMa0892 at 498.569 kb on - strand, within SMa0892 at 498.569 kb on - strand, within SMa0892 at 498.777 kb on - strand, within SMa0892 at 499.069 kb on + strand, within SMa0892 at 499.069 kb on + strand, within SMa0892 at 499.070 kb on - strand, within SMa0892 at 499.097 kb on + strand, within SMa0892 at 499.098 kb on - strand, within SMa0892 at 499.112 kb on + strand, within SMa0892 at 499.134 kb on + strand, within SMa0892 at 499.134 kb on + strand, within SMa0892 at 499.135 kb on - strand, within SMa0892 at 499.165 kb on + strand, within SMa0892 at 499.231 kb on + strand, within SMa0892 at 499.232 kb on - strand, within SMa0892 at 499.448 kb on + strand, within SMa0892 at 499.448 kb on + strand, within SMa0892 at 499.448 kb on + strand, within SMa0892 at 499.449 kb on - strand, within SMa0892 at 499.476 kb on + strand, within SMa0892 at 499.476 kb on + strand, within SMa0892 at 499.528 kb on + strand, within SMa0892 at 499.585 kb on + strand, within SMa0892 at 499.652 kb on - strand, within SMa0892 at 499.832 kb on + strand, within SMa0892 at 499.833 kb on - strand, within SMa0892 at 500.105 kb on + strand, within SMa0892 at 500.106 kb on - strand, within SMa0892 at 500.113 kb on + strand, within SMa0892 at 500.113 kb on + strand, within SMa0892 at 500.113 kb on + strand, within SMa0892 at 500.113 kb on + strand, within SMa0892 at 500.114 kb on - strand, within SMa0892 at 500.122 kb on - strand, within SMa0892 at 500.597 kb on + strand at 500.597 kb on + strand at 500.597 kb on + strand at 500.597 kb on + strand at 500.598 kb on - strand at 500.598 kb on - strand at 500.598 kb on - strand at 500.598 kb on - strand at 500.598 kb on - strand at 500.617 kb on - strand at 500.689 kb on + strand at 500.707 kb on - strand at 500.869 kb on - strand, within SMa0894 at 500.869 kb on - strand, within SMa0894 at 501.149 kb on - strand at 501.263 kb on - strand at 501.263 kb on - strand at 501.366 kb on + strand, within SMa0896 at 501.492 kb on + strand, within SMa0896 at 501.637 kb on + strand, within SMa0896 at 501.638 kb on - strand, within SMa0896
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 496,465 + SMa0890 0.35 -0.4 496,465 + SMa0890 0.35 +0.4 496,561 + SMa0890 0.42 -0.6 496,561 + SMa0890 0.42 -0.4 496,575 + SMa0890 0.43 -1.4 496,576 - SMa0890 0.43 -1.2 496,659 - SMa0890 0.48 +0.2 496,659 - SMa0890 0.48 -2.0 496,659 - SMa0890 0.48 -0.7 496,751 - SMa0890 0.55 -0.2 496,996 - SMa0890 0.72 -0.4 497,035 + SMa0890 0.75 +0.0 497,035 + SMa0890 0.75 -1.4 497,036 - SMa0890 0.75 -0.1 497,036 - SMa0890 0.75 -0.3 497,280 - +0.5 497,280 - -0.3 497,362 + -0.5 497,363 - +0.6 497,363 - -0.6 497,623 + +0.1 497,644 + +1.9 497,645 - -0.8 497,732 - SMa0892 0.10 -0.4 497,830 + SMa0892 0.13 -0.5 498,158 - SMa0892 0.23 -0.7 498,158 - SMa0892 0.23 -2.2 498,217 + SMa0892 0.25 -0.6 498,217 + SMa0892 0.25 +0.2 498,317 - SMa0892 0.28 +0.8 498,325 + SMa0892 0.29 +0.9 498,325 + SMa0892 0.29 +0.6 498,325 + SMa0892 0.29 -0.1 498,325 + SMa0892 0.29 -0.3 498,326 - SMa0892 0.29 +0.3 498,377 + SMa0892 0.30 -0.2 498,559 + SMa0892 0.36 -0.6 498,560 - SMa0892 0.36 +0.9 498,568 + SMa0892 0.36 -0.1 498,568 + SMa0892 0.36 -0.8 498,569 - SMa0892 0.36 -0.3 498,569 - SMa0892 0.36 -1.2 498,777 - SMa0892 0.42 +0.7 499,069 + SMa0892 0.51 -0.4 499,069 + SMa0892 0.51 -0.3 499,070 - SMa0892 0.51 -0.3 499,097 + SMa0892 0.52 -0.1 499,098 - SMa0892 0.52 -1.4 499,112 + SMa0892 0.53 -1.0 499,134 + SMa0892 0.53 -0.1 499,134 + SMa0892 0.53 -0.3 499,135 - SMa0892 0.53 -0.1 499,165 + SMa0892 0.54 -0.3 499,231 + SMa0892 0.56 -0.4 499,232 - SMa0892 0.56 +0.2 499,448 + SMa0892 0.63 -0.8 499,448 + SMa0892 0.63 +0.1 499,448 + SMa0892 0.63 +2.3 499,449 - SMa0892 0.63 -0.3 499,476 + SMa0892 0.64 -0.9 499,476 + SMa0892 0.64 -0.8 499,528 + SMa0892 0.65 +0.1 499,585 + SMa0892 0.67 +1.3 499,652 - SMa0892 0.69 -0.7 499,832 + SMa0892 0.75 -0.2 499,833 - SMa0892 0.75 +0.4 500,105 + SMa0892 0.83 -0.5 500,106 - SMa0892 0.83 -0.9 500,113 + SMa0892 0.83 +0.2 500,113 + SMa0892 0.83 +0.3 500,113 + SMa0892 0.83 -0.3 500,113 + SMa0892 0.83 -0.6 500,114 - SMa0892 0.83 -0.1 500,122 - SMa0892 0.84 -0.6 500,597 + -0.3 500,597 + -0.0 500,597 + -0.1 500,597 + -1.3 500,598 - -0.1 500,598 - -0.6 500,598 - -0.2 500,598 - +0.6 500,598 - +1.1 500,617 - +0.1 500,689 + +0.3 500,707 - -0.9 500,869 - SMa0894 0.33 -0.1 500,869 - SMa0894 0.33 -0.1 501,149 - -0.4 501,263 - +0.5 501,263 - -0.8 501,366 + SMa0896 0.18 +0.0 501,492 + SMa0896 0.36 -1.5 501,637 + SMa0896 0.56 -0.6 501,638 - SMa0896 0.56 -0.2
Or see this region's nucleotide sequence