Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0853 and SMa0854 are separated by 493 nucleotides SMa0854 and SMa0855 are separated by 411 nucleotides
SMa0853: SMa0853 - 3-ketoacyl-ACP synthase, at 469,913 to 471,121
SMa0853
SMa0854: SMa0854 - 3-ketoacyl-ACP reductase, at 471,615 to 472,352
SMa0854
SMa0855: SMa0855 - sulfate adenylyltransferase subunit 2, at 472,764 to 473,663
SMa0855
Position (kb) 471
472
473 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 470.619 kb on - strand, within SMa0853 at 470.780 kb on + strand, within SMa0853 at 470.830 kb on + strand, within SMa0853 at 470.830 kb on + strand, within SMa0853 at 470.865 kb on - strand, within SMa0853 at 470.987 kb on + strand, within SMa0853 at 471.341 kb on - strand at 471.447 kb on + strand at 471.481 kb on + strand at 471.567 kb on + strand at 471.589 kb on - strand at 471.609 kb on - strand at 471.667 kb on + strand at 471.667 kb on + strand at 471.668 kb on - strand at 472.089 kb on - strand, within SMa0854 at 472.278 kb on + strand, within SMa0854 at 472.278 kb on + strand, within SMa0854 at 472.278 kb on + strand, within SMa0854 at 472.302 kb on + strand at 472.402 kb on + strand at 472.403 kb on - strand at 472.476 kb on - strand at 472.549 kb on + strand at 472.748 kb on + strand at 472.749 kb on - strand at 472.749 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 470,619 - SMa0853 0.58 -0.3 470,780 + SMa0853 0.72 -1.1 470,830 + SMa0853 0.76 -1.3 470,830 + SMa0853 0.76 +0.7 470,865 - SMa0853 0.79 +1.2 470,987 + SMa0853 0.89 +0.0 471,341 - -0.5 471,447 + +0.5 471,481 + -1.2 471,567 + -1.7 471,589 - +0.2 471,609 - -0.2 471,667 + +0.5 471,667 + -1.0 471,668 - +0.4 472,089 - SMa0854 0.64 -1.1 472,278 + SMa0854 0.90 -1.0 472,278 + SMa0854 0.90 +5.0 472,278 + SMa0854 0.90 -0.7 472,302 + +0.6 472,402 + -1.3 472,403 - -0.2 472,476 - +0.5 472,549 + -0.3 472,748 + -1.8 472,749 - +0.2 472,749 - +1.3
Or see this region's nucleotide sequence