Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0819 and SMa0822 are separated by 31 nucleotides
SMa0819: SMa0819 - FixB electron transfer flavoprotein alpha chain, at 449,368 to 450,429
SMa0819
SMa0822: SMa0822 - FixA electron transfer flavoprotein beta chain, at 450,461 to 451,339
SMa0822
Position (kb) 450
451
452 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 449.508 kb on + strand, within SMa0819 at 449.508 kb on + strand, within SMa0819 at 449.509 kb on - strand, within SMa0819 at 449.509 kb on - strand, within SMa0819 at 449.509 kb on - strand, within SMa0819 at 449.575 kb on + strand, within SMa0819 at 449.579 kb on + strand, within SMa0819 at 449.579 kb on + strand, within SMa0819 at 449.777 kb on - strand, within SMa0819 at 449.777 kb on - strand, within SMa0819 at 449.874 kb on + strand, within SMa0819 at 449.899 kb on + strand, within SMa0819 at 449.900 kb on - strand, within SMa0819 at 449.946 kb on - strand, within SMa0819 at 449.946 kb on - strand, within SMa0819 at 449.946 kb on - strand, within SMa0819 at 450.016 kb on + strand, within SMa0819 at 450.016 kb on + strand, within SMa0819 at 450.017 kb on - strand, within SMa0819 at 450.017 kb on - strand, within SMa0819 at 450.090 kb on + strand, within SMa0819 at 450.091 kb on - strand, within SMa0819 at 450.201 kb on - strand, within SMa0819 at 450.237 kb on + strand, within SMa0819 at 450.238 kb on - strand, within SMa0819 at 450.385 kb on + strand at 450.396 kb on - strand at 450.644 kb on + strand, within SMa0822 at 450.790 kb on + strand, within SMa0822 at 450.790 kb on + strand, within SMa0822 at 450.791 kb on - strand, within SMa0822 at 450.807 kb on - strand, within SMa0822 at 450.807 kb on - strand, within SMa0822 at 450.900 kb on + strand, within SMa0822 at 450.901 kb on - strand, within SMa0822 at 451.185 kb on + strand, within SMa0822 at 451.328 kb on + strand at 451.329 kb on - strand at 451.452 kb on + strand at 451.604 kb on - strand at 451.838 kb on + strand at 451.845 kb on + strand at 451.845 kb on + strand at 451.846 kb on - strand at 451.860 kb on - strand at 451.880 kb on + strand at 451.881 kb on - strand at 451.962 kb on + strand at 452.230 kb on + strand at 452.301 kb on + strand at 452.302 kb on - strand at 452.302 kb on - strand at 452.302 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 449,508 + SMa0819 0.13 -0.3 449,508 + SMa0819 0.13 -0.2 449,509 - SMa0819 0.13 +1.3 449,509 - SMa0819 0.13 -0.2 449,509 - SMa0819 0.13 -0.7 449,575 + SMa0819 0.19 +0.7 449,579 + SMa0819 0.20 +0.5 449,579 + SMa0819 0.20 -0.5 449,777 - SMa0819 0.39 +0.3 449,777 - SMa0819 0.39 -0.3 449,874 + SMa0819 0.48 -0.4 449,899 + SMa0819 0.50 -0.2 449,900 - SMa0819 0.50 +0.5 449,946 - SMa0819 0.54 -0.4 449,946 - SMa0819 0.54 +0.8 449,946 - SMa0819 0.54 +0.7 450,016 + SMa0819 0.61 +0.1 450,016 + SMa0819 0.61 +0.7 450,017 - SMa0819 0.61 -0.3 450,017 - SMa0819 0.61 +0.4 450,090 + SMa0819 0.68 -2.6 450,091 - SMa0819 0.68 +1.0 450,201 - SMa0819 0.78 +0.7 450,237 + SMa0819 0.82 +0.3 450,238 - SMa0819 0.82 +0.1 450,385 + -0.2 450,396 - +0.0 450,644 + SMa0822 0.21 -0.9 450,790 + SMa0822 0.37 -1.0 450,790 + SMa0822 0.37 -0.3 450,791 - SMa0822 0.38 -0.3 450,807 - SMa0822 0.39 -1.6 450,807 - SMa0822 0.39 +0.7 450,900 + SMa0822 0.50 -1.3 450,901 - SMa0822 0.50 -0.1 451,185 + SMa0822 0.82 -0.7 451,328 + +0.4 451,329 - +0.1 451,452 + +3.9 451,604 - -0.8 451,838 + +0.4 451,845 + -1.2 451,845 + +1.0 451,846 - -0.3 451,860 - -0.6 451,880 + +2.0 451,881 - -0.9 451,962 + +0.3 452,230 + +0.4 452,301 + -0.1 452,302 - +0.0 452,302 - +0.2 452,302 - +1.3
Or see this region's nucleotide sequence