Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0792 and SMa0793 overlap by 4 nucleotides SMa0793 and SMa0794 overlap by 4 nucleotides SMa0794 and SMa0796 are separated by 5 nucleotides
SMa0792: SMa0792 - hypothetical protein, at 431,220 to 432,053
SMa0792
SMa0793: SMa0793 - hypothetical protein, at 432,050 to 432,985
SMa0793
SMa0794: SMa0794 - Monoxygenase, at 432,982 to 434,022
SMa0794
SMa0796: SMa0796 - hypothetical protein, at 434,028 to 435,491
SMa0796
Position (kb) 432
433
434
435 Strain fitness (log2 ratio) -2
-1
0
1
2 at 431.986 kb on + strand at 431.987 kb on - strand at 432.160 kb on + strand, within SMa0793 at 432.175 kb on + strand, within SMa0793 at 432.176 kb on - strand, within SMa0793 at 432.176 kb on - strand, within SMa0793 at 432.236 kb on + strand, within SMa0793 at 432.451 kb on - strand, within SMa0793 at 432.451 kb on - strand, within SMa0793 at 432.451 kb on - strand, within SMa0793 at 432.606 kb on + strand, within SMa0793 at 432.741 kb on - strand, within SMa0793 at 432.874 kb on + strand, within SMa0793 at 432.875 kb on - strand, within SMa0793 at 432.923 kb on + strand at 433.154 kb on + strand, within SMa0794 at 433.182 kb on + strand, within SMa0794 at 433.182 kb on + strand, within SMa0794 at 433.183 kb on - strand, within SMa0794 at 433.312 kb on + strand, within SMa0794 at 433.313 kb on - strand, within SMa0794 at 433.678 kb on + strand, within SMa0794 at 433.678 kb on + strand, within SMa0794 at 433.678 kb on + strand at 433.679 kb on - strand, within SMa0794 at 433.730 kb on + strand, within SMa0794 at 433.730 kb on + strand, within SMa0794 at 433.730 kb on + strand, within SMa0794 at 433.730 kb on + strand, within SMa0794 at 433.730 kb on + strand, within SMa0794 at 433.731 kb on - strand, within SMa0794 at 433.731 kb on - strand, within SMa0794 at 433.731 kb on - strand, within SMa0794 at 433.733 kb on - strand, within SMa0794 at 433.733 kb on - strand, within SMa0794 at 433.736 kb on - strand, within SMa0794 at 433.736 kb on - strand, within SMa0794 at 433.736 kb on - strand, within SMa0794 at 433.736 kb on - strand, within SMa0794 at 433.736 kb on - strand, within SMa0794 at 433.736 kb on - strand, within SMa0794 at 433.741 kb on + strand, within SMa0794 at 433.904 kb on - strand, within SMa0794 at 433.904 kb on - strand, within SMa0794 at 433.904 kb on - strand, within SMa0794 at 433.928 kb on - strand at 433.928 kb on - strand at 434.021 kb on - strand at 434.046 kb on + strand at 434.046 kb on + strand at 434.046 kb on + strand at 434.047 kb on - strand at 434.047 kb on - strand at 434.337 kb on + strand, within SMa0796 at 434.337 kb on + strand, within SMa0796 at 434.349 kb on + strand, within SMa0796 at 434.353 kb on - strand, within SMa0796 at 434.361 kb on + strand, within SMa0796 at 434.394 kb on + strand, within SMa0796 at 434.394 kb on + strand, within SMa0796 at 434.394 kb on + strand, within SMa0796 at 434.394 kb on + strand, within SMa0796 at 434.395 kb on - strand, within SMa0796 at 434.395 kb on - strand, within SMa0796 at 434.693 kb on - strand, within SMa0796 at 434.693 kb on - strand, within SMa0796 at 434.693 kb on - strand, within SMa0796 at 434.726 kb on + strand, within SMa0796 at 434.726 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.729 kb on - strand, within SMa0796 at 434.729 kb on - strand, within SMa0796 at 434.731 kb on + strand, within SMa0796
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 431,986 + -0.3 431,987 - -0.3 432,160 + SMa0793 0.12 -2.0 432,175 + SMa0793 0.13 +0.2 432,176 - SMa0793 0.13 -0.4 432,176 - SMa0793 0.13 +0.1 432,236 + SMa0793 0.20 -0.1 432,451 - SMa0793 0.43 -0.3 432,451 - SMa0793 0.43 +0.7 432,451 - SMa0793 0.43 +0.2 432,606 + SMa0793 0.59 +0.7 432,741 - SMa0793 0.74 -0.2 432,874 + SMa0793 0.88 +0.3 432,875 - SMa0793 0.88 -0.2 432,923 + +1.1 433,154 + SMa0794 0.17 +1.1 433,182 + SMa0794 0.19 +1.6 433,182 + SMa0794 0.19 -0.3 433,183 - SMa0794 0.19 -0.0 433,312 + SMa0794 0.32 +0.1 433,313 - SMa0794 0.32 -0.1 433,678 + SMa0794 0.67 -0.1 433,678 + SMa0794 0.67 +0.5 433,678 + +1.0 433,679 - SMa0794 0.67 -0.4 433,730 + SMa0794 0.72 +0.5 433,730 + SMa0794 0.72 -0.3 433,730 + SMa0794 0.72 +0.3 433,730 + SMa0794 0.72 +2.0 433,730 + SMa0794 0.72 -0.1 433,731 - SMa0794 0.72 -0.5 433,731 - SMa0794 0.72 -0.3 433,731 - SMa0794 0.72 -0.3 433,733 - SMa0794 0.72 +2.4 433,733 - SMa0794 0.72 +0.9 433,736 - SMa0794 0.72 -0.2 433,736 - SMa0794 0.72 -0.2 433,736 - SMa0794 0.72 +0.4 433,736 - SMa0794 0.72 -0.4 433,736 - SMa0794 0.72 +0.3 433,736 - SMa0794 0.72 +0.5 433,741 + SMa0794 0.73 +1.0 433,904 - SMa0794 0.89 +0.8 433,904 - SMa0794 0.89 +0.5 433,904 - SMa0794 0.89 -0.0 433,928 - -0.1 433,928 - -0.6 434,021 - +0.0 434,046 + +0.3 434,046 + +0.6 434,046 + -1.2 434,047 - -0.3 434,047 - -0.2 434,337 + SMa0796 0.21 -0.3 434,337 + SMa0796 0.21 +2.4 434,349 + SMa0796 0.22 +0.2 434,353 - SMa0796 0.22 -0.6 434,361 + SMa0796 0.23 +0.1 434,394 + SMa0796 0.25 +0.1 434,394 + SMa0796 0.25 +1.0 434,394 + SMa0796 0.25 +0.4 434,394 + SMa0796 0.25 -0.3 434,395 - SMa0796 0.25 -1.2 434,395 - SMa0796 0.25 +0.0 434,693 - SMa0796 0.45 -1.5 434,693 - SMa0796 0.45 -0.6 434,693 - SMa0796 0.45 -0.3 434,726 + SMa0796 0.48 +0.1 434,726 + SMa0796 0.48 -0.0 434,728 + SMa0796 0.48 -1.1 434,728 + SMa0796 0.48 +0.1 434,728 + SMa0796 0.48 -1.0 434,728 + SMa0796 0.48 +0.6 434,728 + -0.3 434,728 + SMa0796 0.48 -0.2 434,728 + SMa0796 0.48 +1.2 434,728 + SMa0796 0.48 -0.3 434,729 - SMa0796 0.48 +2.0 434,729 - SMa0796 0.48 +0.9 434,731 + SMa0796 0.48 +0.3
Or see this region's nucleotide sequence