Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0620 and SMa0621 are separated by 2 nucleotides SMa0621 and SMa0622 overlap by 4 nucleotides SMa0622 and SMa0625 are separated by 431 nucleotides
SMa0620: SMa0620 - hypothetical protein, at 330,668 to 331,474
SMa0620
SMa0621: SMa0621 - FixI2 E1-E2 type cation ATPase, at 331,477 to 333,744
SMa0621
SMa0622: SMa0622 - FixS2 nitrogen fixation protein, at 333,741 to 334,001
SMa0622
SMa0625: SMa0625 - hypothetical protein, at 334,433 to 334,594
SMa0625
Position (kb) 331
332
333
334 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 330.546 kb on - strand at 330.546 kb on - strand at 330.667 kb on + strand at 330.667 kb on + strand at 330.667 kb on + strand at 330.668 kb on - strand at 330.717 kb on + strand at 330.717 kb on + strand at 330.717 kb on + strand at 330.810 kb on - strand, within SMa0620 at 330.831 kb on - strand, within SMa0620 at 330.831 kb on - strand, within SMa0620 at 330.925 kb on + strand, within SMa0620 at 330.925 kb on + strand, within SMa0620 at 330.960 kb on - strand, within SMa0620 at 331.109 kb on + strand, within SMa0620 at 331.110 kb on - strand, within SMa0620 at 331.153 kb on + strand, within SMa0620 at 331.371 kb on + strand, within SMa0620 at 331.457 kb on + strand at 331.495 kb on - strand at 331.495 kb on - strand at 331.495 kb on - strand at 331.774 kb on + strand, within SMa0621 at 331.972 kb on + strand, within SMa0621 at 331.991 kb on - strand, within SMa0621 at 332.084 kb on - strand, within SMa0621 at 332.581 kb on + strand, within SMa0621 at 332.582 kb on - strand, within SMa0621 at 332.678 kb on + strand, within SMa0621 at 332.678 kb on + strand, within SMa0621 at 332.687 kb on + strand, within SMa0621 at 332.732 kb on + strand, within SMa0621 at 332.733 kb on - strand, within SMa0621 at 332.733 kb on - strand, within SMa0621 at 332.741 kb on + strand, within SMa0621 at 332.817 kb on - strand, within SMa0621 at 332.847 kb on - strand, within SMa0621 at 332.880 kb on - strand, within SMa0621 at 333.247 kb on - strand, within SMa0621 at 333.247 kb on - strand, within SMa0621 at 333.568 kb on + strand at 333.569 kb on - strand at 333.569 kb on - strand at 333.569 kb on - strand at 333.748 kb on - strand at 333.748 kb on - strand at 333.748 kb on - strand at 333.748 kb on - strand at 333.748 kb on - strand at 333.748 kb on - strand at 333.980 kb on - strand at 333.980 kb on - strand at 334.346 kb on - strand at 334.351 kb on + strand at 334.400 kb on + strand at 334.400 kb on + strand at 334.642 kb on + strand at 334.642 kb on + strand at 334.642 kb on + strand at 334.666 kb on + strand at 334.667 kb on - strand at 334.707 kb on + strand at 334.708 kb on - strand at 334.737 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 330,546 - -1.0 330,546 - +0.5 330,667 + -1.2 330,667 + +0.4 330,667 + -2.0 330,668 - +0.1 330,717 + +0.4 330,717 + -0.9 330,717 + +0.5 330,810 - SMa0620 0.18 +0.2 330,831 - SMa0620 0.20 -0.6 330,831 - SMa0620 0.20 +0.3 330,925 + SMa0620 0.32 +0.6 330,925 + SMa0620 0.32 -0.7 330,960 - SMa0620 0.36 -0.3 331,109 + SMa0620 0.55 -0.8 331,110 - SMa0620 0.55 -2.1 331,153 + SMa0620 0.60 -1.3 331,371 + SMa0620 0.87 -0.5 331,457 + -1.0 331,495 - -0.1 331,495 - +1.8 331,495 - -0.1 331,774 + SMa0621 0.13 -0.3 331,972 + SMa0621 0.22 -0.9 331,991 - SMa0621 0.23 -1.1 332,084 - SMa0621 0.27 -0.4 332,581 + SMa0621 0.49 -0.2 332,582 - SMa0621 0.49 -1.3 332,678 + SMa0621 0.53 +0.2 332,678 + SMa0621 0.53 -1.0 332,687 + SMa0621 0.53 -1.5 332,732 + SMa0621 0.55 -0.0 332,733 - SMa0621 0.55 -0.9 332,733 - SMa0621 0.55 -0.6 332,741 + SMa0621 0.56 -0.3 332,817 - SMa0621 0.59 -0.2 332,847 - SMa0621 0.60 -0.4 332,880 - SMa0621 0.62 +0.1 333,247 - SMa0621 0.78 +0.2 333,247 - SMa0621 0.78 -0.3 333,568 + -1.1 333,569 - -0.1 333,569 - -0.2 333,569 - -0.0 333,748 - -0.0 333,748 - +2.3 333,748 - -3.2 333,748 - +1.4 333,748 - -0.4 333,748 - +0.2 333,980 - +0.7 333,980 - +0.4 334,346 - +0.6 334,351 + -2.1 334,400 + -0.6 334,400 + -0.0 334,642 + +0.3 334,642 + -0.2 334,642 + +3.2 334,666 + +0.1 334,667 - +0.3 334,707 + +0.6 334,708 - +0.4 334,737 + +0.3
Or see this region's nucleotide sequence