Strain Fitness in Sinorhizobium meliloti 1021 around SMa0609

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0607 and SMa0609 are separated by 57 nucleotidesSMa0609 and SMa0610 are separated by 5 nucleotides SMa0607: SMa0607 - hypothetical protein, at 323,618 to 325,168 SMa0607 SMa0609: SMa0609 - hypothetical protein, at 325,226 to 325,801 SMa0609 SMa0610: SMa0610 - hypothetical protein, at 325,807 to 326,667 SMa0610 Position (kb) 325 326Strain fitness (log2 ratio) -2 -1 0 1 2 3at 324.329 kb on + strand, within SMa0607at 324.426 kb on - strand, within SMa0607at 324.426 kb on - strand, within SMa0607at 324.426 kb on - strand, within SMa0607at 324.740 kb on + strand, within SMa0607at 324.740 kb on + strand, within SMa0607at 324.740 kb on + strand, within SMa0607at 324.740 kb on + strand, within SMa0607at 324.741 kb on - strand, within SMa0607at 324.741 kb on - strand, within SMa0607at 324.741 kb on - strand, within SMa0607at 324.741 kb on - strand, within SMa0607at 324.742 kb on + strand, within SMa0607at 324.742 kb on + strand, within SMa0607at 324.801 kb on - strand, within SMa0607at 324.855 kb on - strand, within SMa0607at 324.867 kb on + strand, within SMa0607at 324.867 kb on + strand, within SMa0607at 324.912 kb on - strand, within SMa0607at 324.912 kb on - strand, within SMa0607at 325.014 kb on + strandat 325.104 kb on - strandat 325.166 kb on + strandat 325.203 kb on + strandat 325.204 kb on - strandat 325.204 kb on - strandat 325.222 kb on + strandat 325.222 kb on + strandat 325.263 kb on + strandat 325.297 kb on + strand, within SMa0609at 325.398 kb on - strand, within SMa0609at 325.604 kb on + strand, within SMa0609at 325.607 kb on + strand, within SMa0609at 325.607 kb on + strand, within SMa0609at 325.638 kb on - strand, within SMa0609at 325.651 kb on + strand, within SMa0609at 325.651 kb on + strand, within SMa0609at 325.652 kb on - strand, within SMa0609at 325.689 kb on - strand, within SMa0609at 325.689 kb on - strand, within SMa0609at 325.766 kb on + strandat 325.767 kb on - strandat 325.767 kb on - strandat 325.791 kb on + strandat 325.791 kb on + strandat 325.799 kb on + strandat 325.799 kb on + strandat 325.800 kb on - strandat 325.800 kb on - strandat 325.800 kb on - strandat 325.838 kb on - strandat 325.948 kb on + strand, within SMa0610at 325.949 kb on - strand, within SMa0610at 325.998 kb on + strand, within SMa0610at 325.999 kb on - strand, within SMa0610at 326.060 kb on + strand, within SMa0610at 326.060 kb on + strand, within SMa0610at 326.242 kb on + strand, within SMa0610at 326.259 kb on - strand, within SMa0610at 326.269 kb on + strand, within SMa0610at 326.269 kb on + strand, within SMa0610at 326.270 kb on - strand, within SMa0610at 326.327 kb on - strand, within SMa0610at 326.327 kb on - strand, within SMa0610at 326.327 kb on - strand, within SMa0610at 326.382 kb on + strand, within SMa0610at 326.389 kb on + strand, within SMa0610at 326.389 kb on + strand, within SMa0610at 326.389 kb on + strand, within SMa0610at 326.390 kb on - strand, within SMa0610at 326.390 kb on - strand, within SMa0610at 326.566 kb on + strand, within SMa0610at 326.566 kb on + strand, within SMa0610at 326.566 kb on + strand, within SMa0610at 326.567 kb on - strand, within SMa0610at 326.583 kb on - strandat 326.598 kb on + strandat 326.665 kb on + strandat 326.666 kb on - strandat 326.666 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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324,329 + SMa0607 0.46 +0.1
324,426 - SMa0607 0.52 -0.4
324,426 - SMa0607 0.52 +0.6
324,426 - SMa0607 0.52 -0.0
324,740 + SMa0607 0.72 +0.2
324,740 + SMa0607 0.72 +0.2
324,740 + SMa0607 0.72 +0.3
324,740 + SMa0607 0.72 +1.0
324,741 - SMa0607 0.72 +0.8
324,741 - SMa0607 0.72 +0.2
324,741 - SMa0607 0.72 +1.2
324,741 - SMa0607 0.72 -0.6
324,742 + SMa0607 0.72 +1.7
324,742 + SMa0607 0.72 +1.0
324,801 - SMa0607 0.76 +0.9
324,855 - SMa0607 0.80 -0.7
324,867 + SMa0607 0.81 -0.2
324,867 + SMa0607 0.81 -0.5
324,912 - SMa0607 0.83 -0.5
324,912 - SMa0607 0.83 -0.0
325,014 + +0.5
325,104 - +0.2
325,166 + -0.3
325,203 + -0.8
325,204 - -1.1
325,204 - -0.3
325,222 + +0.5
325,222 + -0.3
325,263 + -0.8
325,297 + SMa0609 0.12 +0.0
325,398 - SMa0609 0.30 +2.2
325,604 + SMa0609 0.66 -0.3
325,607 + SMa0609 0.66 +0.2
325,607 + SMa0609 0.66 +0.6
325,638 - SMa0609 0.72 -0.9
325,651 + SMa0609 0.74 -0.1
325,651 + SMa0609 0.74 +1.3
325,652 - SMa0609 0.74 +2.4
325,689 - SMa0609 0.80 -0.6
325,689 - SMa0609 0.80 -0.1
325,766 + +0.4
325,767 - +0.1
325,767 - -1.1
325,791 + -0.6
325,791 + +3.0
325,799 + +0.5
325,799 + +0.3
325,800 - -0.3
325,800 - -0.0
325,800 - -0.5
325,838 - +0.3
325,948 + SMa0610 0.16 -1.2
325,949 - SMa0610 0.16 -0.7
325,998 + SMa0610 0.22 -0.6
325,999 - SMa0610 0.22 +1.0
326,060 + SMa0610 0.29 +0.3
326,060 + SMa0610 0.29 +0.2
326,242 + SMa0610 0.51 -2.0
326,259 - SMa0610 0.52 +0.2
326,269 + SMa0610 0.54 -1.9
326,269 + SMa0610 0.54 +0.1
326,270 - SMa0610 0.54 +0.1
326,327 - SMa0610 0.60 -0.2
326,327 - SMa0610 0.60 -0.2
326,327 - SMa0610 0.60 +0.4
326,382 + SMa0610 0.67 +0.0
326,389 + SMa0610 0.68 +0.2
326,389 + SMa0610 0.68 +0.9
326,389 + SMa0610 0.68 +2.1
326,390 - SMa0610 0.68 +0.4
326,390 - SMa0610 0.68 +0.4
326,566 + SMa0610 0.88 -0.3
326,566 + SMa0610 0.88 -0.0
326,566 + SMa0610 0.88 +0.2
326,567 - SMa0610 0.88 +0.7
326,583 - -0.8
326,598 + -0.5
326,665 + +1.0
326,666 - -0.1
326,666 - -0.1

Or see this region's nucleotide sequence