Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0590 and SMa0591 are separated by 28 nucleotides SMa0591 and SMa0592 are separated by 293 nucleotides SMa0592 and SMa0594 overlap by 25 nucleotides
SMa0590: SMa0590 - hypothetical protein, at 314,305 to 314,763
SMa0590
SMa0591: SMa0591 - transposase, fragment, at 314,792 to 314,986
SMa0591
SMa0592: SMa0592 - hypothetical protein, at 315,280 to 316,452
SMa0592
SMa0594: SMa0594 - hypothetical protein, at 316,428 to 317,459
SMa0594
Position (kb) 315
316
317 Strain fitness (log2 ratio) -2
-1
0
1
2 at 314.300 kb on + strand at 314.300 kb on + strand at 314.301 kb on - strand at 314.301 kb on - strand at 314.301 kb on - strand at 314.367 kb on + strand, within SMa0590 at 314.368 kb on - strand, within SMa0590 at 314.368 kb on - strand, within SMa0590 at 314.368 kb on - strand, within SMa0590 at 314.368 kb on - strand, within SMa0590 at 314.372 kb on - strand, within SMa0590 at 314.528 kb on + strand, within SMa0590 at 314.529 kb on - strand, within SMa0590 at 314.640 kb on + strand, within SMa0590 at 314.662 kb on - strand, within SMa0590 at 314.662 kb on - strand, within SMa0590 at 314.720 kb on - strand at 314.751 kb on - strand at 314.762 kb on - strand at 314.791 kb on + strand at 314.791 kb on + strand at 314.792 kb on - strand at 314.814 kb on - strand, within SMa0591 at 314.876 kb on + strand, within SMa0591 at 314.876 kb on + strand, within SMa0591 at 314.876 kb on + strand, within SMa0591 at 314.877 kb on - strand, within SMa0591 at 314.877 kb on - strand, within SMa0591 at 314.877 kb on - strand, within SMa0591 at 314.925 kb on - strand, within SMa0591 at 314.925 kb on - strand, within SMa0591 at 314.948 kb on + strand, within SMa0591 at 315.179 kb on + strand at 315.219 kb on + strand at 315.220 kb on - strand at 315.220 kb on - strand at 315.229 kb on + strand at 315.259 kb on - strand at 315.274 kb on - strand at 315.486 kb on - strand, within SMa0592 at 315.513 kb on + strand, within SMa0592 at 315.513 kb on + strand, within SMa0592 at 315.513 kb on + strand, within SMa0592 at 315.513 kb on + strand, within SMa0592 at 315.514 kb on - strand, within SMa0592 at 315.514 kb on - strand, within SMa0592 at 315.514 kb on - strand, within SMa0592 at 315.550 kb on + strand, within SMa0592 at 315.733 kb on + strand, within SMa0592 at 315.733 kb on + strand, within SMa0592 at 315.733 kb on + strand, within SMa0592 at 315.733 kb on + strand, within SMa0592 at 315.734 kb on - strand, within SMa0592 at 315.736 kb on - strand, within SMa0592 at 315.762 kb on - strand, within SMa0592 at 315.885 kb on + strand, within SMa0592 at 315.982 kb on + strand, within SMa0592 at 315.982 kb on + strand, within SMa0592 at 315.982 kb on + strand, within SMa0592 at 315.983 kb on - strand, within SMa0592 at 316.003 kb on - strand, within SMa0592 at 316.152 kb on - strand, within SMa0592 at 316.329 kb on - strand, within SMa0592 at 316.329 kb on - strand, within SMa0592 at 316.397 kb on + strand at 316.397 kb on + strand at 316.398 kb on - strand at 316.401 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 314,300 + -0.4 314,300 + +0.4 314,301 - -0.5 314,301 - -0.3 314,301 - -0.7 314,367 + SMa0590 0.14 -0.0 314,368 - SMa0590 0.14 -0.1 314,368 - SMa0590 0.14 -0.7 314,368 - SMa0590 0.14 -0.7 314,368 - SMa0590 0.14 -0.1 314,372 - SMa0590 0.15 +1.2 314,528 + SMa0590 0.49 -0.6 314,529 - SMa0590 0.49 -0.3 314,640 + SMa0590 0.73 -0.6 314,662 - SMa0590 0.78 -0.8 314,662 - SMa0590 0.78 -0.2 314,720 - -1.7 314,751 - -0.3 314,762 - -0.2 314,791 + +0.9 314,791 + -0.3 314,792 - -0.5 314,814 - SMa0591 0.11 -0.4 314,876 + SMa0591 0.43 -0.8 314,876 + SMa0591 0.43 -0.1 314,876 + SMa0591 0.43 -0.0 314,877 - SMa0591 0.44 -0.5 314,877 - SMa0591 0.44 -0.1 314,877 - SMa0591 0.44 -0.4 314,925 - SMa0591 0.68 +2.0 314,925 - SMa0591 0.68 -0.2 314,948 + SMa0591 0.80 -0.7 315,179 + +0.1 315,219 + +0.7 315,220 - +0.7 315,220 - +0.5 315,229 + +0.5 315,259 - +0.1 315,274 - +0.4 315,486 - SMa0592 0.18 -0.4 315,513 + SMa0592 0.20 +1.4 315,513 + SMa0592 0.20 -0.8 315,513 + SMa0592 0.20 +0.2 315,513 + SMa0592 0.20 +0.0 315,514 - SMa0592 0.20 +1.7 315,514 - SMa0592 0.20 +0.6 315,514 - SMa0592 0.20 -0.1 315,550 + SMa0592 0.23 -0.0 315,733 + SMa0592 0.39 +0.2 315,733 + SMa0592 0.39 +0.9 315,733 + SMa0592 0.39 +0.4 315,733 + SMa0592 0.39 +0.9 315,734 - SMa0592 0.39 -0.1 315,736 - SMa0592 0.39 +0.1 315,762 - SMa0592 0.41 +0.4 315,885 + SMa0592 0.52 -0.2 315,982 + SMa0592 0.60 -0.2 315,982 + SMa0592 0.60 +0.3 315,982 + SMa0592 0.60 +0.4 315,983 - SMa0592 0.60 -0.4 316,003 - SMa0592 0.62 +0.5 316,152 - SMa0592 0.74 +1.0 316,329 - SMa0592 0.89 +0.8 316,329 - SMa0592 0.89 +0.3 316,397 + -2.1 316,397 + -0.4 316,398 - -0.2 316,401 + +0.4
Or see this region's nucleotide sequence