Strain Fitness in Sinorhizobium meliloti 1021 around SMa0394

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0392 and SMa0394 are separated by 64 nucleotidesSMa0394 and SMa0396 overlap by 4 nucleotidesSMa0396 and SMa0398 overlap by 4 nucleotides SMa0392: SMa0392 - ABC transporter substrate-binding protein, at 212,503 to 213,618 SMa0392 SMa0394: SMa0394 - ABC transporter permease, at 213,683 to 214,627 SMa0394 SMa0396: SMa0396 - ABC transporter permease, at 214,624 to 215,424 SMa0396 SMa0398: SMa0398 - histidinol dehydrogenase, at 215,421 to 216,791 SMa0398 Position (kb) 213 214 215Strain fitness (log2 ratio) -2 -1 0 1 2at 212.709 kb on + strand, within SMa0392at 212.709 kb on + strand, within SMa0392at 212.710 kb on - strand, within SMa0392at 212.710 kb on - strand, within SMa0392at 212.710 kb on - strand, within SMa0392at 212.710 kb on - strand, within SMa0392at 212.710 kb on - strand, within SMa0392at 212.956 kb on + strand, within SMa0392at 212.956 kb on + strand, within SMa0392at 212.962 kb on + strand, within SMa0392at 212.962 kb on + strand, within SMa0392at 212.968 kb on + strand, within SMa0392at 212.968 kb on + strand, within SMa0392at 212.969 kb on - strand, within SMa0392at 213.064 kb on + strand, within SMa0392at 213.064 kb on + strandat 213.065 kb on - strand, within SMa0392at 213.065 kb on - strand, within SMa0392at 213.065 kb on - strand, within SMa0392at 213.065 kb on - strand, within SMa0392at 213.065 kb on - strand, within SMa0392at 213.065 kb on - strand, within SMa0392at 213.211 kb on - strand, within SMa0392at 213.211 kb on - strand, within SMa0392at 213.379 kb on + strand, within SMa0392at 213.379 kb on + strand, within SMa0392at 213.379 kb on + strand, within SMa0392at 213.380 kb on - strand, within SMa0392at 213.394 kb on + strand, within SMa0392at 213.394 kb on + strand, within SMa0392at 213.394 kb on + strand, within SMa0392at 213.394 kb on + strand, within SMa0392at 213.395 kb on - strand, within SMa0392at 213.395 kb on - strand, within SMa0392at 213.395 kb on - strand, within SMa0392at 213.395 kb on - strand, within SMa0392at 213.396 kb on + strand, within SMa0392at 213.396 kb on + strand, within SMa0392at 213.547 kb on - strandat 213.560 kb on + strandat 213.561 kb on - strandat 213.624 kb on + strandat 213.704 kb on + strandat 213.705 kb on - strandat 213.884 kb on - strand, within SMa0394at 213.884 kb on - strand, within SMa0394at 213.884 kb on - strand, within SMa0394at 213.905 kb on + strand, within SMa0394at 213.905 kb on + strand, within SMa0394at 213.905 kb on + strand, within SMa0394at 213.920 kb on + strand, within SMa0394at 214.022 kb on + strand, within SMa0394at 214.022 kb on + strand, within SMa0394at 214.023 kb on - strand, within SMa0394at 214.029 kb on - strand, within SMa0394at 214.029 kb on - strand, within SMa0394at 214.042 kb on + strand, within SMa0394at 214.205 kb on + strand, within SMa0394at 214.206 kb on - strand, within SMa0394at 214.206 kb on - strand, within SMa0394at 214.206 kb on - strand, within SMa0394at 214.221 kb on + strand, within SMa0394at 214.241 kb on + strand, within SMa0394at 214.242 kb on - strand, within SMa0394at 214.404 kb on + strand, within SMa0394at 214.405 kb on - strand, within SMa0394at 214.485 kb on - strand, within SMa0394at 214.485 kb on - strand, within SMa0394at 214.485 kb on - strand, within SMa0394at 214.598 kb on - strandat 214.900 kb on + strand, within SMa0396at 214.900 kb on + strand, within SMa0396at 214.934 kb on - strand, within SMa0396at 214.992 kb on - strand, within SMa0396at 215.162 kb on - strand, within SMa0396at 215.162 kb on - strand, within SMa0396at 215.162 kb on - strand, within SMa0396at 215.293 kb on + strand, within SMa0396at 215.293 kb on + strand, within SMa0396at 215.346 kb on - strandat 215.346 kb on - strandat 215.405 kb on - strandat 215.448 kb on + strandat 215.449 kb on - strandat 215.481 kb on + strandat 215.545 kb on + strandat 215.546 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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212,709 + SMa0392 0.18 -0.1
212,709 + SMa0392 0.18 +0.4
212,710 - SMa0392 0.19 -0.3
212,710 - SMa0392 0.19 +1.1
212,710 - SMa0392 0.19 -0.1
212,710 - SMa0392 0.19 +0.2
212,710 - SMa0392 0.19 -0.4
212,956 + SMa0392 0.41 +0.8
212,956 + SMa0392 0.41 +0.2
212,962 + SMa0392 0.41 -0.0
212,962 + SMa0392 0.41 +0.7
212,968 + SMa0392 0.42 -1.3
212,968 + SMa0392 0.42 -0.7
212,969 - SMa0392 0.42 -0.9
213,064 + SMa0392 0.50 +0.3
213,064 + -0.2
213,065 - SMa0392 0.50 -0.5
213,065 - SMa0392 0.50 -0.5
213,065 - SMa0392 0.50 +0.0
213,065 - SMa0392 0.50 -0.3
213,065 - SMa0392 0.50 -0.2
213,065 - SMa0392 0.50 -0.2
213,211 - SMa0392 0.63 +2.1
213,211 - SMa0392 0.63 -2.0
213,379 + SMa0392 0.78 +0.0
213,379 + SMa0392 0.78 -0.7
213,379 + SMa0392 0.78 -0.2
213,380 - SMa0392 0.79 -0.4
213,394 + SMa0392 0.80 +0.2
213,394 + SMa0392 0.80 +0.3
213,394 + SMa0392 0.80 -0.3
213,394 + SMa0392 0.80 -0.0
213,395 - SMa0392 0.80 +1.0
213,395 - SMa0392 0.80 -0.3
213,395 - SMa0392 0.80 +0.1
213,395 - SMa0392 0.80 +0.5
213,396 + SMa0392 0.80 +0.3
213,396 + SMa0392 0.80 -0.6
213,547 - -0.6
213,560 + +0.4
213,561 - -0.0
213,624 + +0.3
213,704 + -0.3
213,705 - -0.4
213,884 - SMa0394 0.21 +0.2
213,884 - SMa0394 0.21 -0.4
213,884 - SMa0394 0.21 +0.5
213,905 + SMa0394 0.23 -0.3
213,905 + SMa0394 0.23 +0.6
213,905 + SMa0394 0.23 +1.7
213,920 + SMa0394 0.25 +1.5
214,022 + SMa0394 0.36 -0.0
214,022 + SMa0394 0.36 +0.4
214,023 - SMa0394 0.36 +0.0
214,029 - SMa0394 0.37 -1.6
214,029 - SMa0394 0.37 -0.5
214,042 + SMa0394 0.38 +0.6
214,205 + SMa0394 0.55 -0.4
214,206 - SMa0394 0.55 +1.1
214,206 - SMa0394 0.55 +0.7
214,206 - SMa0394 0.55 +1.5
214,221 + SMa0394 0.57 +0.5
214,241 + SMa0394 0.59 -0.6
214,242 - SMa0394 0.59 -0.1
214,404 + SMa0394 0.76 -0.9
214,405 - SMa0394 0.76 +0.0
214,485 - SMa0394 0.85 +0.5
214,485 - SMa0394 0.85 +0.9
214,485 - SMa0394 0.85 -0.2
214,598 - +1.4
214,900 + SMa0396 0.34 -0.7
214,900 + SMa0396 0.34 -0.8
214,934 - SMa0396 0.39 -0.9
214,992 - SMa0396 0.46 -0.1
215,162 - SMa0396 0.67 +0.1
215,162 - SMa0396 0.67 +2.4
215,162 - SMa0396 0.67 -0.1
215,293 + SMa0396 0.84 +0.0
215,293 + SMa0396 0.84 +0.1
215,346 - +0.1
215,346 - -0.3
215,405 - -0.2
215,448 + -0.3
215,449 - +0.2
215,481 + -1.5
215,545 + +2.1
215,546 - -0.4

Or see this region's nucleotide sequence