Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0380 and SMa5019 are separated by 160 nucleotides SMa5019 and SMa0383 overlap by 4 nucleotides SMa0383 and SMa0384 are separated by 997 nucleotides
SMa0380: SMa0380 - hydrolase, at 202,407 to 204,389
SMa0380
SMa5019: SMa5019 - hypothetical protein, at 204,550 to 204,993
SMa5019
SMa0383: SMa0383 - hypothetical protein, at 204,990 to 206,588
SMa0383
SMa0384: SMa0384 - TRm3 transposase, at 207,586 to 208,788
SMa0384
Position (kb) 204
205
206
207 Strain fitness (log2 ratio) -2
-1
0
1 at 204.435 kb on + strand at 204.454 kb on + strand at 204.549 kb on + strand at 204.556 kb on + strand at 204.569 kb on + strand at 204.569 kb on + strand at 204.570 kb on - strand at 204.655 kb on + strand, within SMa5019 at 204.655 kb on + strand, within SMa5019 at 204.655 kb on + strand, within SMa5019 at 204.655 kb on + strand, within SMa5019 at 204.656 kb on - strand, within SMa5019 at 204.656 kb on - strand, within SMa5019 at 204.659 kb on + strand, within SMa5019 at 204.659 kb on + strand, within SMa5019 at 204.660 kb on - strand, within SMa5019 at 204.660 kb on - strand, within SMa5019 at 204.660 kb on - strand, within SMa5019 at 205.524 kb on + strand, within SMa0383 at 205.524 kb on + strand, within SMa0383 at 205.545 kb on + strand, within SMa0383 at 205.545 kb on + strand, within SMa0383 at 205.546 kb on - strand, within SMa0383 at 205.546 kb on - strand, within SMa0383 at 205.648 kb on - strand, within SMa0383 at 205.648 kb on - strand, within SMa0383 at 205.777 kb on - strand, within SMa0383 at 206.029 kb on + strand, within SMa0383 at 206.176 kb on + strand, within SMa0383 at 206.176 kb on + strand, within SMa0383 at 206.176 kb on + strand, within SMa0383 at 206.298 kb on + strand, within SMa0383 at 206.520 kb on + strand at 206.567 kb on - strand at 206.567 kb on - strand at 206.620 kb on + strand at 206.856 kb on - strand at 206.856 kb on - strand at 206.916 kb on + strand at 206.971 kb on - strand at 206.980 kb on + strand at 206.980 kb on + strand at 206.981 kb on - strand at 207.038 kb on + strand at 207.062 kb on + strand at 207.062 kb on + strand at 207.063 kb on - strand at 207.063 kb on - strand at 207.063 kb on - strand at 207.063 kb on - strand at 207.071 kb on - strand at 207.138 kb on + strand at 207.151 kb on + strand at 207.151 kb on + strand at 207.152 kb on - strand at 207.152 kb on - strand at 207.184 kb on - strand at 207.195 kb on + strand at 207.195 kb on + strand at 207.196 kb on - strand at 207.226 kb on + strand at 207.290 kb on - strand at 207.351 kb on + strand at 207.351 kb on + strand at 207.352 kb on - strand at 207.411 kb on - strand at 207.413 kb on + strand at 207.509 kb on + strand at 207.510 kb on - strand at 207.520 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 204,435 + +0.7 204,454 + +1.2 204,549 + -0.1 204,556 + -1.1 204,569 + -0.9 204,569 + -0.5 204,570 - -1.0 204,655 + SMa5019 0.24 -2.0 204,655 + SMa5019 0.24 -1.0 204,655 + SMa5019 0.24 -0.6 204,655 + SMa5019 0.24 -0.1 204,656 - SMa5019 0.24 -0.1 204,656 - SMa5019 0.24 -0.5 204,659 + SMa5019 0.25 +0.2 204,659 + SMa5019 0.25 +1.2 204,660 - SMa5019 0.25 +0.7 204,660 - SMa5019 0.25 -1.3 204,660 - SMa5019 0.25 -0.9 205,524 + SMa0383 0.33 +1.1 205,524 + SMa0383 0.33 -1.5 205,545 + SMa0383 0.35 -0.8 205,545 + SMa0383 0.35 -0.6 205,546 - SMa0383 0.35 +0.2 205,546 - SMa0383 0.35 -0.6 205,648 - SMa0383 0.41 +0.3 205,648 - SMa0383 0.41 +0.6 205,777 - SMa0383 0.49 -0.7 206,029 + SMa0383 0.65 -1.4 206,176 + SMa0383 0.74 -0.7 206,176 + SMa0383 0.74 -0.1 206,176 + SMa0383 0.74 +0.1 206,298 + SMa0383 0.82 -0.7 206,520 + +0.1 206,567 - -0.6 206,567 - +0.7 206,620 + +0.0 206,856 - -1.0 206,856 - -0.6 206,916 + -0.9 206,971 - -0.7 206,980 + -1.0 206,980 + +0.1 206,981 - -0.4 207,038 + -0.1 207,062 + -2.6 207,062 + -0.2 207,063 - +0.1 207,063 - -0.2 207,063 - -0.5 207,063 - -1.3 207,071 - -0.1 207,138 + -0.2 207,151 + +0.4 207,151 + +0.4 207,152 - -0.3 207,152 - +0.2 207,184 - -0.6 207,195 + -0.6 207,195 + +0.1 207,196 - -0.2 207,226 + -0.9 207,290 - +0.2 207,351 + -0.3 207,351 + -0.4 207,352 - -0.7 207,411 - +0.3 207,413 + -0.2 207,509 + +0.5 207,510 - +0.5 207,520 + +0.2
Or see this region's nucleotide sequence