Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0376 and SMa5018 are separated by 64 nucleotides SMa5018 and SMa0380 overlap by 1 nucleotides SMa0380 and SMa5019 are separated by 160 nucleotides SMa5019 and SMa0383 overlap by 4 nucleotides
SMa0376: SMa0376 - hydrolase, at 201,366 to 202,055
SMa0376
SMa5018: SMa5018 - hypothetical protein, at 202,120 to 202,407
SMa5018
SMa0380: SMa0380 - hydrolase, at 202,407 to 204,389
SMa0380
SMa5019: SMa5019 - hypothetical protein, at 204,550 to 204,993
SMa5019
SMa0383: SMa0383 - hypothetical protein, at 204,990 to 206,588
SMa0383
Position (kb) 202
203
204
205 Strain fitness (log2 ratio) -2
-1
0
1
2 at 201.718 kb on + strand, within SMa0376 at 201.718 kb on + strand, within SMa0376 at 201.718 kb on + strand, within SMa0376 at 201.718 kb on + strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.774 kb on + strand, within SMa0376 at 201.775 kb on - strand, within SMa0376 at 201.775 kb on - strand, within SMa0376 at 201.775 kb on - strand, within SMa0376 at 201.775 kb on - strand, within SMa0376 at 201.918 kb on + strand, within SMa0376 at 201.918 kb on + strand, within SMa0376 at 201.919 kb on - strand, within SMa0376 at 201.919 kb on - strand, within SMa0376 at 201.978 kb on + strand, within SMa0376 at 201.984 kb on + strand, within SMa0376 at 201.984 kb on + strand, within SMa0376 at 201.985 kb on - strand, within SMa0376 at 201.985 kb on - strand, within SMa0376 at 202.017 kb on - strand at 202.053 kb on + strand at 202.053 kb on + strand at 202.054 kb on - strand at 202.129 kb on + strand at 202.130 kb on - strand at 202.136 kb on + strand at 202.137 kb on - strand at 202.171 kb on + strand, within SMa5018 at 202.360 kb on - strand, within SMa5018 at 202.504 kb on + strand at 202.504 kb on + strand at 202.504 kb on + strand at 202.740 kb on + strand, within SMa0380 at 202.741 kb on - strand, within SMa0380 at 202.741 kb on - strand, within SMa0380 at 202.741 kb on - strand, within SMa0380 at 202.947 kb on + strand, within SMa0380 at 202.947 kb on + strand, within SMa0380 at 202.993 kb on - strand, within SMa0380 at 202.993 kb on - strand, within SMa0380 at 203.048 kb on + strand, within SMa0380 at 203.133 kb on + strand, within SMa0380 at 203.223 kb on + strand, within SMa0380 at 203.224 kb on - strand, within SMa0380 at 203.235 kb on + strand, within SMa0380 at 203.236 kb on - strand, within SMa0380 at 203.236 kb on - strand, within SMa0380 at 203.289 kb on + strand, within SMa0380 at 203.290 kb on - strand, within SMa0380 at 203.541 kb on + strand, within SMa0380 at 203.541 kb on + strand, within SMa0380 at 203.542 kb on - strand, within SMa0380 at 203.710 kb on - strand, within SMa0380 at 203.710 kb on - strand, within SMa0380 at 203.736 kb on + strand, within SMa0380 at 203.835 kb on + strand, within SMa0380 at 203.835 kb on + strand, within SMa0380 at 203.836 kb on - strand, within SMa0380 at 203.867 kb on - strand, within SMa0380 at 204.435 kb on + strand at 204.454 kb on + strand at 204.549 kb on + strand at 204.556 kb on + strand at 204.569 kb on + strand at 204.569 kb on + strand at 204.570 kb on - strand at 204.655 kb on + strand, within SMa5019 at 204.655 kb on + strand, within SMa5019 at 204.655 kb on + strand, within SMa5019 at 204.655 kb on + strand, within SMa5019 at 204.656 kb on - strand, within SMa5019 at 204.656 kb on - strand, within SMa5019 at 204.659 kb on + strand, within SMa5019 at 204.659 kb on + strand, within SMa5019 at 204.660 kb on - strand, within SMa5019 at 204.660 kb on - strand, within SMa5019 at 204.660 kb on - strand, within SMa5019
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 201,718 + SMa0376 0.51 -0.6 201,718 + SMa0376 0.51 -0.0 201,718 + SMa0376 0.51 -0.2 201,718 + SMa0376 0.51 +0.1 201,719 - SMa0376 0.51 -0.6 201,719 - SMa0376 0.51 -0.4 201,719 - SMa0376 0.51 -0.9 201,719 - SMa0376 0.51 +0.3 201,719 - SMa0376 0.51 +0.7 201,719 - SMa0376 0.51 +1.4 201,774 + SMa0376 0.59 -0.9 201,775 - SMa0376 0.59 +2.0 201,775 - SMa0376 0.59 +0.6 201,775 - SMa0376 0.59 -0.9 201,775 - SMa0376 0.59 +0.3 201,918 + SMa0376 0.80 -2.6 201,918 + SMa0376 0.80 +0.0 201,919 - SMa0376 0.80 -1.0 201,919 - SMa0376 0.80 -1.2 201,978 + SMa0376 0.89 +0.1 201,984 + SMa0376 0.90 -0.6 201,984 + SMa0376 0.90 +0.4 201,985 - SMa0376 0.90 +0.3 201,985 - SMa0376 0.90 -0.2 202,017 - -0.4 202,053 + -0.9 202,053 + +0.0 202,054 - +0.3 202,129 + +1.1 202,130 - -0.2 202,136 + -0.6 202,137 - -0.8 202,171 + SMa5018 0.18 +0.4 202,360 - SMa5018 0.83 +0.3 202,504 + +0.8 202,504 + -0.1 202,504 + +0.2 202,740 + SMa0380 0.17 +0.1 202,741 - SMa0380 0.17 +0.9 202,741 - SMa0380 0.17 +0.2 202,741 - SMa0380 0.17 +0.7 202,947 + SMa0380 0.27 +0.4 202,947 + SMa0380 0.27 -0.2 202,993 - SMa0380 0.30 -0.1 202,993 - SMa0380 0.30 -0.1 203,048 + SMa0380 0.32 +0.1 203,133 + SMa0380 0.37 +0.6 203,223 + SMa0380 0.41 +0.0 203,224 - SMa0380 0.41 +0.1 203,235 + SMa0380 0.42 +0.2 203,236 - SMa0380 0.42 +0.5 203,236 - SMa0380 0.42 -0.3 203,289 + SMa0380 0.44 +0.4 203,290 - SMa0380 0.45 -2.4 203,541 + SMa0380 0.57 +0.5 203,541 + SMa0380 0.57 +0.1 203,542 - SMa0380 0.57 +0.4 203,710 - SMa0380 0.66 -1.0 203,710 - SMa0380 0.66 +0.1 203,736 + SMa0380 0.67 -0.5 203,835 + SMa0380 0.72 -0.6 203,835 + SMa0380 0.72 +0.6 203,836 - SMa0380 0.72 -0.1 203,867 - SMa0380 0.74 -0.5 204,435 + +0.7 204,454 + +1.2 204,549 + -0.1 204,556 + -1.1 204,569 + -0.9 204,569 + -0.5 204,570 - -1.0 204,655 + SMa5019 0.24 -2.0 204,655 + SMa5019 0.24 -1.0 204,655 + SMa5019 0.24 -0.6 204,655 + SMa5019 0.24 -0.1 204,656 - SMa5019 0.24 -0.1 204,656 - SMa5019 0.24 -0.5 204,659 + SMa5019 0.25 +0.2 204,659 + SMa5019 0.25 +1.2 204,660 - SMa5019 0.25 +0.7 204,660 - SMa5019 0.25 -1.3 204,660 - SMa5019 0.25 -0.9
Or see this region's nucleotide sequence